GO242346

Overview
NameGO242346
Unique NameGO242346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242346 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.399e-22
Identity = 47/56 (83.93%), Postives = 52/56 (92.86%), Query Frame = 1
Query:    1 GGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 168
            GGD SWS  ++SSYDTRL+LPDNCEKDKVKAELKNGVLYI+IPKT VERKVIDVQ+
Sbjct:  125 GGDDSWSSRTYSSYDTRLKLPDNCEKDKVKAELKNGVLYITIPKTKVERKVIDVQV 180          
BLAST of GO242346 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.949e-20
Identity = 46/54 (85.19%), Postives = 49/54 (90.74%), Query Frame = 1
Query:    7 DPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 168
            D SWSG S SSY TRLQLPDNCEKDK+KAELKNGVL+I+IPKT VERKVIDVQI
Sbjct:  173 DDSWSGRSVSSYGTRLQLPDNCEKDKIKAELKNGVLFITIPKTKVERKVIDVQI 226          
BLAST of GO242346 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.659e-18
Identity = 42/56 (75.00%), Postives = 49/56 (87.50%), Query Frame = 1
Query:    1 GGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 168
            GG+  WS  S+S YDTRL+LPDNCEK+KVKAELK+GVLYI+IPKT +ER VIDVQI
Sbjct:  176 GGEDCWSRKSYSCYDTRLKLPDNCEKEKVKAELKDGVLYITIPKTKIERTVIDVQI 231          
BLAST of GO242346 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.649e-16
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 1
Query:    1 GGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 168
            G D SW G ++SSYDTRL LPDN +KDKVKAELKNGVL ISIPKT VE+KV DV+I
Sbjct:  186 GKDDSW-GRNYSSYDTRLSLPDNVDKDKVKAELKNGVLLISIPKTKVEKKVTDVEI 240          
BLAST of GO242346 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.518e-16
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 1
Query:   13 SWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 168
            SW G ++SSYDTRL LPDN  KDK+KAELKNGVL+ISIPKT VE+KVIDVQI
Sbjct:  184 SW-GRNYSSYDTRLSLPDNVVKDKIKAELKNGVLFISIPKTEVEKKVIDVQI 234          
BLAST of GO242346 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.825e-15
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 1
Query:    4 GDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 168
            GD  W   S SSYD RL LPD C+K KV+AELKNGVL +++PKT VERKVIDVQ+
Sbjct:  185 GDGWWKERSVSSYDMRLALPDECDKSKVRAELKNGVLLVTVPKTEVERKVIDVQV 239          
BLAST of GO242346 vs. ExPASy Swiss-Prot
Match: HS21C_WHEAT (Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.453e-14
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    1 GGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 168
            GGD  W   S SSYD RL LPD C+K +V+AELKNGVL +S+PK   ERKVIDVQ+
Sbjct:  182 GGDGWWKERSVSSYDMRLALPDECDKSQVRAELKNGVLLVSVPKRETERKVIDVQV 237          
The following BLAST results are available for this feature:
BLAST of GO242346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
HS22C_SOYBN9.399e-2283.93Small heat shock protein, chloroplastic (Fragment)... [more]
HS25P_ARATH3.949e-2085.1925.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS21C_PEA1.659e-1875.00Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS22C_PETHY2.649e-1675.00Small heat shock protein, chloroplastic OS=Petunia... [more]
HS21C_SOLLC4.518e-1678.85Small heat shock protein, chloroplastic OS=Solanum... [more]
HS26P_ORYSJ3.825e-1567.2726.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
HS21C_WHEAT1.453e-1464.29Small heat shock protein, chloroplastic OS=Triticu... [more]
back to top
Properties
Property NameValue
Genbank description994 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1148 5, mRNA sequence.