GO242341

Overview
NameGO242341
Unique NameGO242341
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242341 vs. ExPASy Swiss-Prot
Match: PUB50_ARATH (Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana GN=PUB50 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.574e-19
Identity = 40/52 (76.92%), Postives = 49/52 (94.23%), Query Frame = 1
Query:    1 DGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNKQSS 156
            DGFSYELEA++EWL MGHDTSPMTNLRL ++ LTPNHTLRSLIQ+WH+K+++
Sbjct:  710 DGFSYELEAIQEWLSMGHDTSPMTNLRLDYQMLTPNHTLRSLIQDWHSKRAA 761          
BLAST of GO242341 vs. ExPASy Swiss-Prot
Match: PUB55_ARATH (Putative U-box domain-containing protein 55 OS=Arabidopsis thaliana GN=PUB55 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.237e-13
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 1
Query:    1 DGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNKQS 153
            DGF+YE E++ EWL  GH+TSPMTNL+L H  L PNH LRS IQEW  + S
Sbjct:  518 DGFTYEAESLREWLDNGHETSPMTNLKLAHNNLVPNHALRSAIQEWLQRNS 568          
BLAST of GO242341 vs. ExPASy Swiss-Prot
Match: PUB32_ARATH (U-box domain-containing protein 32 OS=Arabidopsis thaliana GN=PUB32 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.867e-12
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 1
Query:    1 DGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNK 147
            DGF+YE EA+ EWL  GHDTSPMTNL+++   L PNH L   IQ+W N+
Sbjct:  756 DGFTYEAEAIREWLANGHDTSPMTNLKMEDCNLIPNHALHLAIQDWQNQ 804          
BLAST of GO242341 vs. ExPASy Swiss-Prot
Match: PUB37_ARATH (U-box domain-containing protein 37 OS=Arabidopsis thaliana GN=PUB37 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.370e-11
Identity = 31/52 (59.62%), Postives = 36/52 (69.23%), Query Frame = 1
Query:    1 DGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNKQSS 156
            DGF+YE EA+  WL  GH+TSPMTN +L H  L PN  LRS IQEW +  SS
Sbjct:  346 DGFTYEAEAISTWLQGGHETSPMTNTKLHHTKLVPNLALRSAIQEWLHASSS 397          
BLAST of GO242341 vs. ExPASy Swiss-Prot
Match: PUB33_ARATH (U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.401e-11
Identity = 29/46 (63.04%), Postives = 33/46 (71.74%), Query Frame = 1
Query:    1 DGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEW 138
            DGF+YE EA+  WL   HDTSPMTN++L H  L  NH LRS IQEW
Sbjct:  784 DGFTYEAEAIRAWLDSEHDTSPMTNVKLSHTSLIANHALRSAIQEW 829          
The following BLAST results are available for this feature:
BLAST of GO242341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PUB50_ARATH2.574e-1976.92Putative U-box domain-containing protein 50 OS=Ara... [more]
PUB55_ARATH1.237e-1362.75Putative U-box domain-containing protein 55 OS=Ara... [more]
PUB32_ARATH8.867e-1259.18U-box domain-containing protein 32 OS=Arabidopsis ... [more]
PUB37_ARATH3.370e-1159.62U-box domain-containing protein 37 OS=Arabidopsis ... [more]
PUB33_ARATH4.401e-1163.04U-box domain-containing protein 33 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank description989 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1142 5, mRNA sequence.