GO242336

Overview
NameGO242336
Unique NameGO242336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242336 vs. ExPASy Swiss-Prot
Match: PSMD3_TOBAC (Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Nicotiana tabacum GN=21D7 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.437e-22
Identity = 51/71 (71.83%), Postives = 53/71 (74.65%), Query Frame = 1
Query:    1 ETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSHXXXXXXXXXXXXXXXXXXLAKHIAEEDDDEF 213
            ETGDIYSTNEPQ+AFNSRIAFCLNMHNEAVRALRFPPNSH                  LAKHIAEEDDD+F
Sbjct:  418 ETGDIYSTNEPQIAFNSRIAFCLNMHNEAVRALRFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 488          
BLAST of GO242336 vs. ExPASy Swiss-Prot
Match: PSMD3_DAUCA (Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Daucus carota GN=21D7 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 2.063e-21
Identity = 51/71 (71.83%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 ETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSHXXXXXXXXXXXXXXXXXXLAKHIAEEDDDEF 213
            ETGDIYSTNEPQ AFNSRIAFCLNMHNEAVRALRFP NSH                  LAKHIAEEDDDEF
Sbjct:  419 ETGDIYSTNEPQAAFNSRIAFCLNMHNEAVRALRFPANSHKDKESAEKRRERQQQEQELAKHIAEEDDDEF 489          
BLAST of GO242336 vs. ExPASy Swiss-Prot
Match: PSD31_ARATH (Probable 26S proteasome non-ATPase regulatory subunit 3a OS=Arabidopsis thaliana GN=EMB2719 PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 2.694e-21
Identity = 49/71 (69.01%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    1 ETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSHXXXXXXXXXXXXXXXXXXLAKHIAEEDDDEF 213
            ETGDIYSTNEPQ AFNSRIAFCLNMHNEAVRALRFPPN+H                  LAKH+AEEDDD+F
Sbjct:  418 ETGDIYSTNEPQTAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESDEKRRERKQQEEELAKHMAEEDDDDF 488          
BLAST of GO242336 vs. ExPASy Swiss-Prot
Match: PSD32_ARATH (Probable 26S proteasome non-ATPase regulatory subunit 3b OS=Arabidopsis thaliana GN=At1g75990 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.337e-20
Identity = 48/71 (67.61%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    1 ETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSHXXXXXXXXXXXXXXXXXXLAKHIAEEDDDEF 213
            ETGDIYSTNEPQ AFNSRIAFCLNMHNEAVRALRFPPN+H                  LAK++AEEDDD+F
Sbjct:  417 ETGDIYSTNEPQTAFNSRIAFCLNMHNEAVRALRFPPNTHREKESEEKRREMKQQEEELAKYMAEEDDDDF 487          
BLAST of GO242336 vs. ExPASy Swiss-Prot
Match: PSMD3_ANOST (Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Anopheles stephensi GN=DOXA2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.750e-12
Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    1 ETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSH-XXXXXXXXXXXXXXXXXXLAKHIAEEDDDEF 213
            E+ DIYST EPQLAF+ RI+FCL++HN++V+A+R+PP S+                   LAK +AEEDDD+F
Sbjct:  429 ESTDIYSTREPQLAFHQRISFCLDLHNQSVKAMRYPPKSYGKELESAEERREREQQDLELAKEMAEEDDDDF 500          
BLAST of GO242336 vs. ExPASy Swiss-Prot
Match: PSMD3_ANOGA (Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Anopheles gambiae GN=Dox-A2 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 5.093e-12
Identity = 35/72 (48.61%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    1 ETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSH-XXXXXXXXXXXXXXXXXXLAKHIAEEDDDEF 213
            E+ DIYST EPQLAF+ RI+FCL++HN++V+A+R+PP S+                   LAK +AEEDDD F
Sbjct:  425 ESTDIYSTREPQLAFHQRISFCLDLHNQSVKAMRYPPKSYGKELESAEERREREQQDLELAKEMAEEDDDGF 496          
BLAST of GO242336 vs. ExPASy Swiss-Prot
Match: PSMD3_DROME (Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Drosophila melanogaster GN=Rpn3 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.688e-12
Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    1 ETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSH-XXXXXXXXXXXXXXXXXXLAKHIAEEDDDEF 213
            E+ DIYST EPQLAF+ RI+FCLN+HN++V+A+R+PP S+                   LAK +AE+D+D F
Sbjct:  423 ESTDIYSTREPQLAFHERISFCLNLHNQSVKAMRYPPKSYGKDLESAEERREREQQDLELAKEMAEDDEDGF 494          
BLAST of GO242336 vs. ExPASy Swiss-Prot
Match: PSMD3_CAEEL (26S proteasome non-ATPase regulatory subunit 3 OS=Caenorhabditis elegans GN=rpn-3 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.528e-11
Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 1
Query:    1 ETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSHXXXXXXXXXXXXXXXXXXLAKHIAEEDDDEF 213
            ET DIY T+EPQ  F++RI +CL +HN+AV+ALR+PP                      AK +A+EDDD+F
Sbjct:  434 ETADIYRTSEPQAHFDTRIRYCLELHNQAVKALRYPPKKKIAVETIEQAREREQQELEFAKELADEDDDDF 504          
BLAST of GO242336 vs. ExPASy Swiss-Prot
Match: PSMD3_MOUSE (26S proteasome non-ATPase regulatory subunit 3 OS=Mus musculus GN=Psmd3 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 9.605e-11
Identity = 33/69 (47.83%), Postives = 43/69 (62.32%), Query Frame = 1
Query:   10 DIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSH-XXXXXXXXXXXXXXXXXXLAKHIAEEDDDEF 213
            DIYST EPQLAF+ RI+FCL++HN +V+A+RFPP S+                    AK +AE+DDD F
Sbjct:  461 DIYSTREPQLAFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSF 529          
BLAST of GO242336 vs. ExPASy Swiss-Prot
Match: PSMD3_HUMAN (26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens GN=PSMD3 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 9.605e-11
Identity = 33/69 (47.83%), Postives = 43/69 (62.32%), Query Frame = 1
Query:   10 DIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSH-XXXXXXXXXXXXXXXXXXLAKHIAEEDDDEF 213
            DIYST EPQLAF+ RI+FCL++HN +V+A+RFPP S+                    AK +AE+DDD F
Sbjct:  465 DIYSTREPQLAFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSF 533          
The following BLAST results are available for this feature:
BLAST of GO242336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PSMD3_TOBAC2.437e-2271.83Probable 26S proteasome non-ATPase regulatory subu... [more]
PSMD3_DAUCA2.063e-2171.83Probable 26S proteasome non-ATPase regulatory subu... [more]
PSD31_ARATH2.694e-2169.01Probable 26S proteasome non-ATPase regulatory subu... [more]
PSD32_ARATH1.337e-2067.61Probable 26S proteasome non-ATPase regulatory subu... [more]
PSMD3_ANOST1.750e-1248.61Probable 26S proteasome non-ATPase regulatory subu... [more]
PSMD3_ANOGA5.093e-1248.61Probable 26S proteasome non-ATPase regulatory subu... [more]
PSMD3_DROME8.688e-1247.22Probable 26S proteasome non-ATPase regulatory subu... [more]
PSMD3_CAEEL2.528e-1143.6626S proteasome non-ATPase regulatory subunit 3 OS=... [more]
PSMD3_MOUSE9.605e-1147.8326S proteasome non-ATPase regulatory subunit 3 OS=... [more]
PSMD3_HUMAN9.605e-1147.8326S proteasome non-ATPase regulatory subunit 3 OS=... [more]

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Properties
Property NameValue
Genbank description984 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1135 5, mRNA sequence.