GO242328

Overview
NameGO242328
Unique NameGO242328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242328 vs. ExPASy Swiss-Prot
Match: PDIA6_PONAB (Protein disulfide-isomerase A6 OS=Pongo abelii GN=PDIA6 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.526e-24
Identity = 54/130 (41.54%), Postives = 85/130 (65.38%), Query Frame = 3
Query:    3 GRNKYLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKESGRGGKGNLPLDG--TPSIVKTEPWDGKDGQIIEEDEFSLDELMAE*AAGKDDL 386
            GRN YLE+LL +A+K+K+  + ++W  AG Q +LE  +G+GG+GYPA+ A+N +K  +  LK +F  + I EF++E   G     P+ G   P+IV+ EPWDG+DG++  ED+  L ++  +   GKD+L
Sbjct:  312 GRNSYLEVLLKLADKYKKKMWGWLWTEAGAQSELETALGIGGFGYPAMAAINARKMKFALLKGSFSEQGINEFLRELSFGRGSTAPVGGGAFPTIVEREPWDGRDGELPVEDDIDLSDVELD-DLGKDEL 440          
BLAST of GO242328 vs. ExPASy Swiss-Prot
Match: PDIA6_HUMAN (Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.526e-24
Identity = 54/130 (41.54%), Postives = 85/130 (65.38%), Query Frame = 3
Query:    3 GRNKYLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKESGRGGKGNLPLDG--TPSIVKTEPWDGKDGQIIEEDEFSLDELMAE*AAGKDDL 386
            GRN YLE+LL +A+K+K+  + ++W  AG Q +LE  +G+GG+GYPA+ A+N +K  +  LK +F  + I EF++E   G     P+ G   P+IV+ EPWDG+DG++  ED+  L ++  +   GKD+L
Sbjct:  312 GRNSYLEVLLKLADKYKKKMWGWLWTEAGAQSELETALGIGGFGYPAMAAINARKMKFALLKGSFSEQGINEFLRELSFGRGSTAPVGGGAFPTIVEREPWDGRDGELPVEDDIDLSDVELD-DLGKDEL 440          
BLAST of GO242328 vs. ExPASy Swiss-Prot
Match: PDIA6_RAT (Protein disulfide-isomerase A6 OS=Rattus norvegicus GN=Pdia6 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 7.574e-24
Identity = 51/119 (42.86%), Postives = 78/119 (65.55%), Query Frame = 3
Query:    3 GRNKYLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKESGRGGKGNLPLDG--TPSIVKTEPWDGKDGQIIEEDEFSLDEL 353
            GRN YLE+LL +A+K+K+  + ++W  AG Q +LEN +G+GG+GYPA+ A+N +K  +  LK +F  + I EF++E   G     P+ G   P+I   EPWDGKDG++  ED+  L ++
Sbjct:  312 GRNSYLEVLLKLADKYKKKMWGWLWTEAGAQYELENALGIGGFGYPAMAAINARKMKFALLKGSFSEQGINEFLRELSFGRGSTAPVGGGSFPNITPREPWDGKDGELPVEDDIDLSDV 430          
BLAST of GO242328 vs. ExPASy Swiss-Prot
Match: PDIA6_MOUSE (Protein disulfide-isomerase A6 OS=Mus musculus GN=Pdia6 PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 7.574e-24
Identity = 51/119 (42.86%), Postives = 78/119 (65.55%), Query Frame = 3
Query:    3 GRNKYLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKESGRGGKGNLPLDG--TPSIVKTEPWDGKDGQIIEEDEFSLDEL 353
            GRN YLE+LL +A+K+K+  + ++W  AG Q +LEN +G+GG+GYPA+ A+N +K  +  LK +F  + I EF++E   G     P+ G   P+I   EPWDGKDG++  ED+  L ++
Sbjct:  312 GRNSYLEVLLKLADKYKKKMWGWLWTEAGAQYELENALGIGGFGYPAMAAINARKMKFALLKGSFSEQGINEFLRELSFGRGSTAPVGGGSFPTITPREPWDGKDGELPVEDDIDLSDV 430          
BLAST of GO242328 vs. ExPASy Swiss-Prot
Match: PDIA6_MESAU (Protein disulfide-isomerase A6 OS=Mesocricetus auratus GN=PDIA6 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.428e-22
Identity = 48/118 (40.68%), Postives = 76/118 (64.41%), Query Frame = 3
Query:    6 RNKYLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKESGRGGKGNLPLDG--TPSIVKTEPWDGKDGQIIEEDEFSLDEL 353
            RN YLE+LL +A+K+K+  + ++W  AG Q +LEN +G+GG+GYPA+  +N +K  +  LK +F  + I EF++E   G     P+ G   P+I   EPWDG+DG++  ED+  L ++
Sbjct:  312 RNSYLEILLKLADKYKKKMWGWLWTEAGAQSELENALGIGGFGYPAMARINARKMKFALLKGSFSEQGINEFLRELSFGRASTAPVGGGSFPAITAREPWDGRDGELPVEDDIDLSDV 429          
BLAST of GO242328 vs. ExPASy Swiss-Prot
Match: PDIA6_CAEEL (Probable protein disulfide-isomerase A6 OS=Caenorhabditis elegans GN=tag-320 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.182e-22
Identity = 52/118 (44.07%), Postives = 71/118 (60.17%), Query Frame = 3
Query:    6 RNKYLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKE--SGRGGKGNLPLDGTPSIVKTEPWDGKDGQIIEEDEFSLDEL 353
            RN YL ML   +EKFK+  + ++W     QP LE    VGG+GYPA+ ALN +K  Y  LK +F  + I EF+++   G+G   +L  DG P I KTE WDGKDG +  ED+  L ++
Sbjct:  316 RNNYLAMLKEQSEKFKKNLWGWIWVEGAAQPALEESFEVGGFGYPAMTALNFRKNKYAVLKGSFGKDGIHEFLRDLSYGKGRTSSLRGDGFPKIQKTEKWDGKDGALPAEDDIDLSDI 433          
The following BLAST results are available for this feature:
BLAST of GO242328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PDIA6_PONAB1.526e-2441.54Protein disulfide-isomerase A6 OS=Pongo abelii GN=... [more]
PDIA6_HUMAN1.526e-2441.54Protein disulfide-isomerase A6 OS=Homo sapiens GN=... [more]
PDIA6_RAT7.574e-2442.86Protein disulfide-isomerase A6 OS=Rattus norvegicu... [more]
PDIA6_MOUSE7.574e-2442.86Protein disulfide-isomerase A6 OS=Mus musculus GN=... [more]
PDIA6_MESAU1.428e-2240.68Protein disulfide-isomerase A6 OS=Mesocricetus aur... [more]
PDIA6_CAEEL3.182e-2244.07Probable protein disulfide-isomerase A6 OS=Caenorh... [more]
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Properties
Property NameValue
Genbank description976 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1127 5, mRNA sequence.