GO242316

Overview
NameGO242316
Unique NameGO242316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242316 vs. ExPASy Swiss-Prot
Match: TM9S2_MOUSE (Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.992e-18
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 1
Query:   73 YMHLCVEDWRWWWKAFFASGSVALYVFLYSINYSVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 333
            Y HLC ED+ W W++F  SG  A+Y  +Y+I+Y    LQ ++G  S +LY GY++IM +   L TGTIGF   F+FV  ++S VK+D
Sbjct:  577 YFHLCAEDYHWQWRSFLTSGFTAVYFLIYAIHYFFSKLQ-ITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 662          
BLAST of GO242316 vs. ExPASy Swiss-Prot
Match: TM9S2_RAT (Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.044e-17
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 1
Query:   73 YMHLCVEDWRWWWKAFFASGSVALYVFLYSINYSVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 333
            Y HLC ED+ W W++F  SG  A+Y  +Y+I+Y    LQ ++G  S +LY GY++IM +   L TGTIGF   F+FV  ++S VK+D
Sbjct:  578 YFHLCAEDYHWQWRSFLTSGFTAVYFLVYAIHYFFSKLQ-ITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663          
BLAST of GO242316 vs. ExPASy Swiss-Prot
Match: TM9S2_PONAB (Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.044e-17
Identity = 39/87 (44.83%), Postives = 57/87 (65.52%), Query Frame = 1
Query:   73 YMHLCVEDWRWWWKAFFASGSVALYVFLYSINYSVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 333
            Y HLC ED+ W W++F  SG  A+Y  +Y+++Y    LQ ++G  S +LY GY++IM +   L TGTIGF   F+FV  ++S VK+D
Sbjct:  578 YFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQ-ITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663          
BLAST of GO242316 vs. ExPASy Swiss-Prot
Match: TM9S2_HUMAN (Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.044e-17
Identity = 39/87 (44.83%), Postives = 57/87 (65.52%), Query Frame = 1
Query:   73 YMHLCVEDWRWWWKAFFASGSVALYVFLYSINYSVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 333
            Y HLC ED+ W W++F  SG  A+Y  +Y+++Y    LQ ++G  S +LY GY++IM +   L TGTIGF   F+FV  ++S VK+D
Sbjct:  578 YFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQ-ITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663          
BLAST of GO242316 vs. ExPASy Swiss-Prot
Match: TM9S4_RAT (Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.507e-16
Identity = 39/87 (44.83%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   73 YMHLCVEDWRWWWKAFFASGSVALYVFLYSINYSVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 333
            Y  LC ED+RWWW+ F  SG  A YV +Y+I Y V  L  +   + +LLY GY+ +M ++  L TGTIGF  ++ FV  ++++VKID
Sbjct:  558 YFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643          
BLAST of GO242316 vs. ExPASy Swiss-Prot
Match: TM9S4_PONAB (Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.507e-16
Identity = 39/87 (44.83%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   73 YMHLCVEDWRWWWKAFFASGSVALYVFLYSINYSVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 333
            Y  LC ED+RWWW+ F  SG  A YV +Y+I Y V  L  +   + +LLY GY+ +M ++  L TGTIGF  ++ FV  ++++VKID
Sbjct:  557 YFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642          
BLAST of GO242316 vs. ExPASy Swiss-Prot
Match: TM9S4_MOUSE (Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.507e-16
Identity = 39/87 (44.83%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   73 YMHLCVEDWRWWWKAFFASGSVALYVFLYSINYSVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 333
            Y  LC ED+RWWW+ F  SG  A YV +Y+I Y V  L  +   + +LLY GY+ +M ++  L TGTIGF  ++ FV  ++++VKID
Sbjct:  558 YFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643          
BLAST of GO242316 vs. ExPASy Swiss-Prot
Match: TM9S4_HUMAN (Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.507e-16
Identity = 39/87 (44.83%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   73 YMHLCVEDWRWWWKAFFASGSVALYVFLYSINYSVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 333
            Y  LC ED+RWWW+ F  SG  A YV +Y+I Y V  L  +   + +LLY GY+ +M ++  L TGTIGF  ++ FV  ++++VKID
Sbjct:  557 YFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642          
BLAST of GO242316 vs. ExPASy Swiss-Prot
Match: TM9S4_BOVIN (Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.507e-16
Identity = 39/87 (44.83%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   73 YMHLCVEDWRWWWKAFFASGSVALYVFLYSINYSVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 333
            Y  LC ED+RWWW+ F  SG  A YV +Y+I Y V  L  +   + +LLY GY+ +M ++  L TGTIGF  ++ FV  ++++VKID
Sbjct:  557 YFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642          
BLAST of GO242316 vs. ExPASy Swiss-Prot
Match: YON8_SCHPO (Transmembrane 9 superfamily protein C1105.08 OS=Schizosaccharomyces pombe GN=SPBC1105.08 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.358e-16
Identity = 35/87 (40.23%), Postives = 58/87 (66.67%), Query Frame = 1
Query:   73 YMHLCVEDWRWWWKAFFASGSVALYVFLYSINYSVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 333
            Y  LC E++ WWW++F   G   +YVF++S+ Y  F + S S   +A+LY GYSL+++V +    G++GF  +F FV+ +++S+KID
Sbjct:  544 YFQLCSENYNWWWRSFITPGFCGIYVFIFSVFYWFFKISS-SSLATAVLYFGYSLLISVLVFFLCGSVGFFGAFLFVNKIYASIKID 629          
The following BLAST results are available for this feature:
BLAST of GO242316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
TM9S2_MOUSE7.992e-1845.98Transmembrane 9 superfamily member 2 OS=Mus muscul... [more]
TM9S2_RAT1.044e-1745.98Transmembrane 9 superfamily member 2 OS=Rattus nor... [more]
TM9S2_PONAB1.044e-1744.83Transmembrane 9 superfamily member 2 OS=Pongo abel... [more]
TM9S2_HUMAN1.044e-1744.83Transmembrane 9 superfamily member 2 OS=Homo sapie... [more]
TM9S4_RAT1.507e-1644.83Transmembrane 9 superfamily member 4 OS=Rattus nor... [more]
TM9S4_PONAB1.507e-1644.83Transmembrane 9 superfamily member 4 OS=Pongo abel... [more]
TM9S4_MOUSE1.507e-1644.83Transmembrane 9 superfamily member 4 OS=Mus muscul... [more]
TM9S4_HUMAN1.507e-1644.83Transmembrane 9 superfamily member 4 OS=Homo sapie... [more]
TM9S4_BOVIN1.507e-1644.83Transmembrane 9 superfamily member 4 OS=Bos taurus... [more]
YON8_SCHPO3.358e-1640.23Transmembrane 9 superfamily protein C1105.08 OS=Sc... [more]

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Properties
Property NameValue
Genbank description964 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1115 5, mRNA sequence.