GO242315

Overview
NameGO242315
Unique NameGO242315
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242315 vs. ExPASy Swiss-Prot
Match: CCD1_PHAVU (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.500e-22
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 1
Query:    1 GYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQAKL 177
            GYL+ F HDE  GKS V+VIDAKTMSADPVAVVELP+RVPYGFHAFFV+EEQL+EQAKL
Sbjct:  485 GYLVLFVHDENAGKSFVHVIDAKTMSADPVAVVELPNRVPYGFHAFFVTEEQLQEQAKL 543          
BLAST of GO242315 vs. ExPASy Swiss-Prot
Match: CCD1_ARATH (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.891e-21
Identity = 48/56 (85.71%), Postives = 51/56 (91.07%), Query Frame = 1
Query:    1 GYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQ 168
            GYLIFF HDE TGKS V VIDAKTMSA+PVAVVELPHRVPYGFHA FV+EEQL+EQ
Sbjct:  480 GYLIFFVHDENTGKSCVTVIDAKTMSAEPVAVVELPHRVPYGFHALFVTEEQLQEQ 535          
BLAST of GO242315 vs. ExPASy Swiss-Prot
Match: CCD_CROSA (Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.226e-21
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 1
Query:    1 GYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQ 168
            GYLIFF HDE TGKS VNVIDAKTMSA+PVAVVELP+RVPYGFHAFFV+EEQL+ Q
Sbjct:  487 GYLIFFVHDENTGKSEVNVIDAKTMSAEPVAVVELPNRVPYGFHAFFVNEEQLQWQ 542          
BLAST of GO242315 vs. ExPASy Swiss-Prot
Match: CCD1_PEA (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.226e-21
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 1
Query:    1 GYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQAK 174
            GYLIFF HDE TGKS V+VIDAK MSA+PVAVVELP RVPYGFHAFFV+E+QL+EQAK
Sbjct:  483 GYLIFFVHDENTGKSFVHVIDAKRMSAEPVAVVELPQRVPYGFHAFFVTEDQLQEQAK 540          
The following BLAST results are available for this feature:
BLAST of GO242315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CCD1_PHAVU6.500e-2283.05Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD1_ARATH1.891e-2185.71Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD_CROSA3.226e-2185.71Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Cr... [more]
CCD1_PEA3.226e-2182.76Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
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Properties
Property NameValue
Genbank description963 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1114 5, mRNA sequence.