GO242304

Overview
NameGO242304
Unique NameGO242304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242304 vs. ExPASy Swiss-Prot
Match: TSR1_PONAB (Pre-rRNA-processing protein TSR1 homolog OS=Pongo abelii GN=TSR1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 6.131e-30
Identity = 72/145 (49.66%), Postives = 89/145 (61.38%), Query Frame = 2
Query:   11 IKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEIAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPI 445
            ++K K+   E E FPDEVDTP DV AR RF KYRGLKSFRTS WDPKE+LP +YARIF F  FT T+K +F    + E E  +       YV LH+ EVP  +    C   + +PLIA  LL HE KMSVL+  V++      P+
Sbjct:  473 LEKYKQERLE-EMFPDEVDTPRDVAARIRFQKYRGLKSFRTSPWDPKENLPQDYARIFQFQNFTNTRKSIFKEVEEKEVEGAE----VGCYVTLHVSEVPVSVVE--C-FRQGTPLIAFSLLPHEQKMSVLNMVVRRDPGNTEPV 609          
BLAST of GO242304 vs. ExPASy Swiss-Prot
Match: TSR1_HUMAN (Pre-rRNA-processing protein TSR1 homolog OS=Homo sapiens GN=TSR1 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 8.007e-30
Identity = 72/145 (49.66%), Postives = 89/145 (61.38%), Query Frame = 2
Query:   11 IKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEIAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPI 445
            ++K K+   E E FPDEVDTP DV AR RF KYRGLKSFRTS WDPKE+LP +YARIF F  FT T+K +F    + E E  +       YV LH+ EVP  +    C   + +PLIA  LL HE KMSVL+  V++      P+
Sbjct:  472 LEKYKQERLE-EMFPDEVDTPRDVAARIRFQKYRGLKSFRTSPWDPKENLPQDYARIFQFQNFTNTRKSIFKEVEEKEVEGAE----VGWYVTLHVSEVPVSVVE--C-FRQGTPLIAFSLLPHEQKMSVLNMVVRRDPGNTEPV 608          
BLAST of GO242304 vs. ExPASy Swiss-Prot
Match: TSR1_XENLA (Pre-rRNA-processing protein TSR1 homolog OS=Xenopus laevis GN=tsr1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.510e-28
Identity = 68/148 (45.95%), Postives = 87/148 (58.78%), Query Frame = 2
Query:    2 EDEIKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEIAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPI 445
            E+++ +  +   +DE FPDEVDTP D  AR RF KYRGLKSFRTS WD KE+LP +YARIF F  F RT+K VF      E+E  D+      YV +HI  VP  +           PL+   LL HE KMSV++  V++H   + PI
Sbjct:  480 EEQMLEKYKLQRQDEVFPDEVDTPRDQIARIRFQKYRGLKSFRTSPWDVKENLPRDYARIFQFHDFFRTRKRVF-----KEEEEKDEGAMVGWYVTVHISAVPVSVME---HFKHGLPLVLCSLLPHEQKMSVMNMLVRRHPGNNEPI 619          
BLAST of GO242304 vs. ExPASy Swiss-Prot
Match: TSR1_MOUSE (Pre-rRNA-processing protein TSR1 homolog OS=Mus musculus GN=Tsr1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.364e-28
Identity = 68/150 (45.33%), Postives = 90/150 (60.00%), Query Frame = 2
Query:    2 EDEIKKIKEAHAE--DEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEIAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPI 445
            EDE + +++   E  +E FPDE+DTP DV AR RF KYRGLKSFRTS WDPKE+LP +YARIF F  F  T+K +F    + E E  +       YV LH+ +VP  +        + +PLIA  LL +E KMSVL+  V ++     P+
Sbjct:  465 EDEERMLEKYKQERLEEMFPDEMDTPRDVAARIRFQKYRGLKSFRTSPWDPKENLPRDYARIFQFQNFVNTRKRIFKEIEEKEAEGAE----VGWYVTLHVSDVPVSVVE---YFRQGAPLIAFSLLPYEQKMSVLNMVVSRNPGNTEPV 607          
BLAST of GO242304 vs. ExPASy Swiss-Prot
Match: TSR1_DICDI (Pre-rRNA-processing protein TSR1 homolog OS=Dictyostelium discoideum GN=tsr1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.371e-26
Identity = 62/150 (41.33%), Postives = 96/150 (64.00%), Query Frame = 2
Query:    2 EDEIKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPA--SLYVRLHIKEVPAGIAHRLCEIAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPI 445
            EDE K++++   ++  +PDEVDTP +VP+R RF+K+RGLKSFR+S WD KE+LP +YA+IF F  F ++ +   A         + D+ PA   +YVR+H+   P  +  R        P +A GL ++E+K+S+LHFSV+KH +Y+  +
Sbjct:  509 EDERKQLQQ---DEILYPDEVDTPGNVPSRIRFSKFRGLKSFRSSPWDVKENLPIDYAKIFQFHSFNQSMRASIA---------ILDNAPAKPDMYVRIHLVNGPKQLVERNTTAITTKPEVAVGLYRYENKISLLHFSVEKHKSYEETV 646          
BLAST of GO242304 vs. ExPASy Swiss-Prot
Match: TSR1_DROME (Pre-rRNA-processing protein TSR1 homolog OS=Drosophila melanogaster GN=CG7338 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.938e-25
Identity = 59/147 (40.14%), Postives = 89/147 (60.54%), Query Frame = 2
Query:    5 DEIKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEIAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPI 445
            + +KK+++A   D+ +PDE+DTPLDVPAR+RF KYRGL+SFRTS WD KE+LP +YARI+ F  F RT++ +   A + E       V   LYV L++  VP    +          +I  G+L HE +M V++  +++    + P+
Sbjct:  475 ETLKKLQQART-DQLWPDEIDTPLDVPARERFQKYRGLESFRTSPWDAKENLPADYARIYQFQNFDRTKRRILNEAKEFE------GVLPGLYVTLYVINVPESRWNAFKSAQLMDNIIVYGMLPHEHQMCVMNVVLQRMPDSEVPL 614          
BLAST of GO242304 vs. ExPASy Swiss-Prot
Match: TSR1_CAEEL (Pre-rRNA-processing protein TSR1 homolog OS=Caenorhabditis elegans GN=tag-151 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.938e-25
Identity = 62/148 (41.89%), Postives = 92/148 (62.16%), Query Frame = 2
Query:    8 EIKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFA--NALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEIAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPI 445
            E++K ++   E+ ++PDEVDTP+D+PAR  F KYRGLKSFRTS+WDPKE+LP +YARIF F  +  T+K+V +      ++ +++ D      +  + I+ VP  +   L    +   L+   LL HE KMSVL+  +KKH +   PI
Sbjct:  438 EVEKYRKER-ENAQWPDEVDTPMDMPARIAFQKYRGLKSFRTSTWDPKENLPLDYARIFQFANYRNTKKNVMSKIGGNDVDADSVADKKFNGAFASVFIENVPVAV---LEAYKDAKNLVLFQLLPHEHKMSVLNMVLKKHPSCTIPI 581          
BLAST of GO242304 vs. ExPASy Swiss-Prot
Match: TSR1_CAEBR (Pre-rRNA-processing protein TSR1 homolog OS=Caenorhabditis briggsae GN=tag-151 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.323e-24
Identity = 62/149 (41.61%), Postives = 90/149 (60.40%), Query Frame = 2
Query:    8 EIKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFANALKMEQENMD---DSVPASLYVRLHIKEVPAGIAHRLCEIAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPI 445
            E++K ++   E+ ++PDEVDTP+D PAR RF KYRGLKSFRTS+WD KE+LP +YARIF F  +  T+K+V +     + +  D   D     ++  ++I+ VP  +        E   L+   LL HE KMS+L+  +KKH +   PI
Sbjct:  441 EVEKYRKER-ENAQWPDEVDTPIDQPARIRFQKYRGLKSFRTSTWDAKENLPVDYARIFQFANYKNTKKNVMSKIGGNDVDAGDAVIDKKFNGVFASVYIENVPVSVME---AYKETKNLVLFQLLPHEQKMSILNMVLKKHPSCTVPI 585          
BLAST of GO242304 vs. ExPASy Swiss-Prot
Match: TSR1_SCHPO (Ribosome biogenesis protein tsr1 homolog OS=Schizosaccharomyces pombe GN=SPAC23H4.15 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.162e-12
Identity = 49/150 (32.67%), Postives = 83/150 (55.33%), Query Frame = 2
Query:    5 DEIKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKE---SLPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEIAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPI 445
            +E +K ++   E+ EFPDEV+   +  AR+RF KYRGL+S  TS WD  E   + P E+ ++F F+ + R  K+ F     ++Q  + ++ P    V + ++ VP  I     +    + L+   LLQ+E+K++V  F+  +H  Y+ PI
Sbjct:  459 EEYRKKQKELQEELEFPDEVELQPNELARERFKKYRGLRSLYTSQWDADEYDPNEPREWRQLFKFENY-RNLKNKF-----LKQPFIGEAKPGKA-VYVELRNVPIEIFEYYNK--PWNLLVLYSLLQYENKLTVSQFTAMQHSEYEEPI 599          
The following BLAST results are available for this feature:
BLAST of GO242304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
TSR1_PONAB6.131e-3049.66Pre-rRNA-processing protein TSR1 homolog OS=Pongo ... [more]
TSR1_HUMAN8.007e-3049.66Pre-rRNA-processing protein TSR1 homolog OS=Homo s... [more]
TSR1_XENLA1.510e-2845.95Pre-rRNA-processing protein TSR1 homolog OS=Xenopu... [more]
TSR1_MOUSE3.364e-2845.33Pre-rRNA-processing protein TSR1 homolog OS=Mus mu... [more]
TSR1_DICDI5.371e-2641.33Pre-rRNA-processing protein TSR1 homolog OS=Dictyo... [more]
TSR1_DROME5.938e-2540.14Pre-rRNA-processing protein TSR1 homolog OS=Drosop... [more]
TSR1_CAEEL5.938e-2541.89Pre-rRNA-processing protein TSR1 homolog OS=Caenor... [more]
TSR1_CAEBR1.323e-2441.61Pre-rRNA-processing protein TSR1 homolog OS=Caenor... [more]
TSR1_SCHPO1.162e-1232.67Ribosome biogenesis protein tsr1 homolog OS=Schizo... [more]
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Properties
Property NameValue
Genbank description952 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1103 5, mRNA sequence.