GO242267

Overview
NameGO242267
Unique NameGO242267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242267 vs. ExPASy Swiss-Prot
Match: SODC1_MESCR (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.278e-18
Identity = 56/128 (43.75%), Postives = 72/128 (56.25%), Query Frame = 2
Query:    2 EGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 310
            EGSGPTTV G++SGL PG H   +H  G+ +N  +STGP F PAG +           G L NITV  +G ATF I  + IPL+G NS++GR +VVH+ P             + + G  VA G IGL
Sbjct:   23 EGSGPTTVTGNVSGLRPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVHADPDDLGRGGHELSKATGNAGGRVACGVIGL 150          
BLAST of GO242267 vs. ExPASy Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.847e-18
Identity = 57/128 (44.53%), Postives = 70/128 (54.69%), Query Frame = 2
Query:    2 EGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 310
            EG GPTTV G++SGL PG H   +H  G+ +N  +STGP F PAG +           G L NITV  +G A+F I  K IPL+G NSVIGR +VVH  P             + + G  VA G IGL
Sbjct:   23 EGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHGDPDDLGKGGHELSKSTGNAGGRVACGIIGL 150          
BLAST of GO242267 vs. ExPASy Swiss-Prot
Match: SODC_PAUKA (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.282e-18
Identity = 50/107 (46.73%), Postives = 64/107 (59.81%), Query Frame = 2
Query:    2 EGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSPSPDPGDG 286
            EG GPTTV G++SGL PG H   +H  G+ +N  +STGP F PAG +           G L N+TV  +G A F I  K IPL+G +S+IGR +VVH+ P  D G G
Sbjct:   23 EGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCLSTGPHFNPAGKEHGAPDDEVRHAGDLGNVTVGEDGTAAFTIVDKQIPLTGPHSIIGRAVVVHADPD-DLGKG 128          
BLAST of GO242267 vs. ExPASy Swiss-Prot
Match: SODC_SPIOL (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.845e-17
Identity = 54/128 (42.19%), Postives = 70/128 (54.69%), Query Frame = 2
Query:    2 EGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 310
            EG GPTTV G++SGL PG H   +H  G+ +N  +STGP + P G +           G L NITV  +G ATF I  + IPLSG NS++GR +VVH+ P             + + G  VA G IGL
Sbjct:   23 EGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPNGKEHGAPEDDVRHAGDLGNITVGDDGTATFTIIDSQIPLSGPNSIVGRAVVVHAEPDDLGRGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of GO242267 vs. ExPASy Swiss-Prot
Match: SODC_ANACO (Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.410e-17
Identity = 54/128 (42.19%), Postives = 69/128 (53.91%), Query Frame = 2
Query:    2 EGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 310
            EG GPTTV GS+SGL PG H   +H  G+ +N  +STGP F PAG +           G L N+TV  +G     I  + IPLSG+NS+IGR +VVH+ P             + + G  VA G IGL
Sbjct:   23 EGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGNEHGAPEDETRHAGDLGNVTVGEDGTVNVNIVDSQIPLSGSNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of GO242267 vs. ExPASy Swiss-Prot
Match: SODC_PEA (Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=SODCC PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.110e-17
Identity = 55/128 (42.97%), Postives = 69/128 (53.91%), Query Frame = 2
Query:    2 EGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 310
            EG+GPTTV G+L+GL PG H   IH  G+ +N  ISTGP F P G +           G L NI V  +G  +F I    IPL+GTNS+IGR +VVH+ P             + + G  VA G IGL
Sbjct:   23 EGNGPTTVTGTLAGLKPGLHGFHIHALGDTTNGCISTGPHFNPNGKEHGAPEDETRHAGDLGNINVGDDGTVSFTITDNHIPLTGTNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of GO242267 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSJ (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. japonica GN=SODCC1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.368e-17
Identity = 52/128 (40.62%), Postives = 69/128 (53.91%), Query Frame = 2
Query:    2 EGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 310
            EG GPTTV GS+SGL PG H   IH  G+ +N  +STGP + PAG +           G L N+T   +G+A   +  + IPL+G NS+IGR +VVH+ P             + + G  VA G IGL
Sbjct:   23 EGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of GO242267 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSI (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. indica GN=SODCC1 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 5.368e-17
Identity = 52/128 (40.62%), Postives = 69/128 (53.91%), Query Frame = 2
Query:    2 EGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 310
            EG GPTTV GS+SGL PG H   IH  G+ +N  +STGP + PAG +           G L N+T   +G+A   +  + IPL+G NS+IGR +VVH+ P             + + G  VA G IGL
Sbjct:   23 EGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of GO242267 vs. ExPASy Swiss-Prot
Match: SODC_ZANAE (Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethiopica GN=SODCC PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.011e-17
Identity = 49/107 (45.79%), Postives = 63/107 (58.88%), Query Frame = 2
Query:    2 EGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSPSPDPGDG 286
            EG GPTT+ GSLSGL PG H   +H  G+ +N  +STGP F PAG +           G L N+TV  +G   F +  + IPL+G NSV+GR +VVH+  S D G G
Sbjct:   23 EGEGPTTITGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDGNRHAGDLGNVTVGEDGTVNFTVTDSQIPLTGLNSVVGRAVVVHAD-SDDLGKG 128          
BLAST of GO242267 vs. ExPASy Swiss-Prot
Match: SODC_CAPAN (Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN=SODCC PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.664e-16
Identity = 52/128 (40.62%), Postives = 70/128 (54.69%), Query Frame = 2
Query:    2 EGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 310
            +G  PTTV G++SGL PG H   +H  G+ +N  +STGP + PAG +           G L NITV  +G A+F I  + IPL+G  S+IGRG+VVH+ P             + + G  VA G IGL
Sbjct:   23 DGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDENRHAGDLGNITVGEDGTASFTITDEQIPLTGPQSIIGRGVVVHADPDDLGKGGHELTKTTGNAGGRVACGIIGL 150          
The following BLAST results are available for this feature:
BLAST of GO242267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
SODC1_MESCR1.278e-1843.75Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum... [more]
SODC_IPOBA2.847e-1844.53Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN... [more]
SODC_PAUKA8.282e-1846.73Superoxide dismutase [Cu-Zn] OS=Paulownia kawakami... [more]
SODC_SPIOL1.845e-1742.19Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea ... [more]
SODC_ANACO2.410e-1742.19Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=... [more]
SODC_PEA4.110e-1742.97Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=S... [more]
SODC1_ORYSJ5.368e-1740.63Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC1_ORYSI5.368e-1740.63Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC_ZANAE7.011e-1745.79Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethi... [more]
SODC_CAPAN2.664e-1640.63Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank description915 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1066 5, mRNA sequence.