GO242251

Overview
NameGO242251
Unique NameGO242251
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242251 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 2.397e-35
Identity = 99/246 (40.24%), Postives = 132/246 (53.66%), Query Frame = 1
Query:   13 CLLF*DVDV*AVYLGGTTLMPVP-LMVAFFTFSLV*CTLLVTAP*LVQQKRQPGGATPCYRE*LPPLYAPLIEDGSEEKFYWAITREDRFGWCKGSGIND*ICENDTAKFVAACRA*SIMNIAGVKA*NNENDSMFLLSGLVVGLIVHSLVIAVFHTPSFDGPKMTMEKLLEYGHMIAQEKYNEQTVQLAAQYLSEAALGESHADASHSGSFYGKPSQQMSVPVPD*STDDAAQNSDLAA*SDDGT 747
            CL   D+D  A  +GGTT   V   MV     ++      V  P +  ++        C       LYAPLI DG  EKFYWA TREDR G CKG    D I + D    V      SI     ++A   +++    +  L V  I   LV +    P F+ P+MT EKL+EYG+M+  E+ N + VQLA  YLS+AALG+++ADA   G+FYGK +QQ+++PVP+  TD  A+N D  A SDDGT
Sbjct:  224 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGT 469          
BLAST of GO242251 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 3.130e-35
Identity = 97/248 (39.11%), Postives = 133/248 (53.63%), Query Frame = 1
Query:   13 CLLF*DVDV*AVYLGGTTLMPVP-LMVAFFTFSLV*CTLLVTAP*LVQQKRQPGGATPCYRE*LPPLYAPLIEDGSEEKFYWAITREDRFGWCKGSGIND*ICENDTAKFVAACRA*SIMNIAGVKA*NNENDSMFLLSGLVVGLIVHSLVIAVFHTPSFDGPKMTMEKLLEYGHMIAQEKYNEQTVQLAAQYLSEAALGESHADASHSGSFYGKPSQQMSVPVPD*STDDAAQNSDLAA*SDDGTLL 753
            CL   D+D  A  +GGTT   V   MV     ++      V  P +  ++  P             LYAPLI DG  EKFYWA TR+DR G CKG    D + +    K V      SI     ++A   +++    +    +  I   LV +     +F+ PKMT+EKLLEYGHM+ QE+ N + VQLA  Y+S+AALG+++ DA  +GSFYGK +QQ ++PVP+  TD  A+N D  A SDDG+ L
Sbjct:  214 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCL 461          
BLAST of GO242251 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 5.339e-35
Identity = 100/249 (40.16%), Postives = 138/249 (55.42%), Query Frame = 1
Query:   13 CLLF*DVDV*AVYLGGTTLMPVP-LMVAFFTFSLV*CTLLVTAP*LVQQKRQPGGATPCYRE*LPPLYAPLIEDGSEEKFYWAITREDRFGWCKGSGIND*ICENDTAKFVAACRA*SIMNIAGVKA*NNENDSMFLLSGLVVGLIVHSLVIAVFHTPSFDGPKMTMEKLLEYGHMIAQEKYNEQTVQLAAQYLSEAALGESHADASHSGSFYGKPSQQM-SVPVPD*STDDAAQNSDLAA*SDDGTLL 753
            CL   D+D  A  +GGTT   V   MV     ++      V  P +  ++  P             LYAPLI DG  EKFYWA TR+DR G CKG    D + + D  K V +    SI     ++A   +++    +S   V  I   LV +    P F+ PKMT+EKL+EYG+M+ +E+ N + VQLA QYLSEAALG++++DA  +GSFYG+ +QQ  ++PVP+  TD  A+N D  A SDDG+ L
Sbjct:  215 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYGQGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSCL 463          
BLAST of GO242251 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 5.595e-35
Identity = 78/180 (43.33%), Postives = 108/180 (60.00%), Query Frame = 1
Query:  208 LYAPLIEDGSEEKFYWAITREDRFGWCKGSGIND*ICENDTAKFVAACRA*SIMNIAGVKA*NNENDSMFLLSGLVVGLIVHSLVIAVFHTPSFDGPKMTMEKLLEYGHMIAQEKYNEQTVQLAAQYLSEAALGESHADASHSGSFYGKPSQQMSVPVPD*STDDAAQNSDLAA*SDDGT 747
            LYAPLI DG  EKFYWA TREDR G C G    D +      K V A    SI     ++A    ++    ++ + V  +   LV +    P F+ P+MT++KL+EYG+M+ QE+ N + VQLA QY+S AALG+++ DA   G+F+GK +QQ+S+PV    TD  A+N D  A SDDG+
Sbjct:  288 LYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGS 467          

HSP 2 Score: 34.6538 bits (78), Expect = 5.595e-35
Identity = 16/29 (55.17%), Postives = 19/29 (65.52%), Query Frame = 2
Query:  116 DAPFW*QLPDSCNKKDNRGVPLLATGNDF 202
            D P   QLP   NK+DN  VP++ TGNDF
Sbjct:  257 DNPTNVQLPGMYNKQDNARVPIIVTGNDF 285          
BLAST of GO242251 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.527e-33
Identity = 98/248 (39.52%), Postives = 131/248 (52.82%), Query Frame = 1
Query:   13 CLLF*DVDV*AVYLGGTTLMPVP-LMVAFFTFSLV*CTLLVTAP*LVQQKRQPGGATPCYRE*LPPLYAPLIEDGSEEKFYWAITREDRFGWCKGSGIND*ICENDTAKFVAACRA*SIMNIAGVKA*NNENDSMFLLSGLVVGLIVHSLVIAVFHTPSFDGPKMTMEKLLEYGHMIAQEKYNEQTVQLAAQYLSEAALGESHADASHSGSFYGKPSQQM--SVPVPD*STDDAAQNSDLAA*SDDGT 747
            CL   D+D  A  +GGTT   V   MV     ++      V  P +  ++  P             LYAPLI DG  EKFYWA TREDR G CKG    D + ++D  K V      SI     ++A    ++    +S + V  I   LV +    PSF+ PKMT++KLL YG M+ QE+ N + VQLA +Y+SEAALG+++ DA   G+FYG  + Q   +VPVP+  TD  A N D  A SDDG+
Sbjct:  224 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGS 471          
BLAST of GO242251 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.795e-29
Identity = 67/147 (45.58%), Postives = 91/147 (61.90%), Query Frame = 1
Query:  208 LYAPLIEDGSEEKFYWAITREDRFGWCKGSGIND*ICENDTAKFVAACRA*SIMNIAGVKA*NNENDSMFLLSGLVVGLIVHSLVIAVFHTPSFDGPKMTMEKLLEYGHMIAQEKYNEQTVQLAAQYLSEAALGESHADASHSGSFY 648
            LYAPLI DG  EKFYWA TR+DR G CKG    D + E D  K V      SI     ++A   +++    +SG+ V      LV +    P+FD PKM+++KLL+YG+M+ QE+ N + VQLA +YL+EAALG ++ DA  SGSF+
Sbjct:  292 LYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438          

HSP 2 Score: 33.113 bits (74), Expect = 1.795e-29
Identity = 15/29 (51.72%), Postives = 19/29 (65.52%), Query Frame = 2
Query:  116 DAPFW*QLPDSCNKKDNRGVPLLATGNDF 202
            D P   QLP   NK++N  VP++ TGNDF
Sbjct:  261 DNPTNVQLPGMYNKEENARVPIIVTGNDF 289          
BLAST of GO242251 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.795e-29
Identity = 68/147 (46.26%), Postives = 89/147 (60.54%), Query Frame = 1
Query:  208 LYAPLIEDGSEEKFYWAITREDRFGWCKGSGIND*ICENDTAKFVAACRA*SIMNIAGVKA*NNENDSMFLLSGLVVGLIVHSLVIAVFHTPSFDGPKMTMEKLLEYGHMIAQEKYNEQTVQLAAQYLSEAALGESHADASHSGSFY 648
            LYAPLI DG  EKFYWA TREDR G CKG    D + E D  + V      SI     ++A   +++    +SG+ V  +   LV +    P+FD PKMT++KLL Y  M+ QE+ N + VQLA QYL+EAALG ++ DA  SGSF+
Sbjct:  294 LYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440          

HSP 2 Score: 34.6538 bits (78), Expect = 1.795e-29
Identity = 16/29 (55.17%), Postives = 19/29 (65.52%), Query Frame = 2
Query:  116 DAPFW*QLPDSCNKKDNRGVPLLATGNDF 202
            D P   QLP   NK+DN  VP++ TGNDF
Sbjct:  263 DNPTNVQLPGMYNKEDNARVPIIVTGNDF 291          
BLAST of GO242251 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.274e-28
Identity = 86/217 (39.63%), Postives = 120/217 (55.30%), Query Frame = 1
Query:    7 RSCLLF*-DVDV*AVYLGGTTLMPVP-LMVAFFTFSLV*CTLLVTAP*LVQQKRQPGGATPCYRE*LPPLYAPLIEDGSEEKFYWAITREDRFGWCKGSGIND*ICENDTAKFVAACRA*SIMNIAGVKA*NNENDSMFLLSGLVVGLIVHSLVIAVFHTPSFDGPKMTMEKLLEYGHMIAQEKYNEQTVQLAAQYLSEAALGESHADASHSGSFYG 651
            + C LF  D+D  A  LGGTT   V   MV     ++      V  P +  ++  P             LYAPLI DG  EKFYWA TREDR G C G   +D + + D  K V      SI     ++A   +++    ++G+ V  I   LV +    P+F+ PKMT+EKLLEYG+M+ QE+ N + VQLA +YLSEAALG++++DA ++G+FYG
Sbjct:  221 KMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437          
BLAST of GO242251 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.664e-28
Identity = 84/215 (39.07%), Postives = 114/215 (53.02%), Query Frame = 1
Query:   13 CLLF*DVDV*AVYLGGTTLMPVP-LMVAFFTFSLV*CTLLVTAP*LVQQKRQPGGATPCYRE*LPPLYAPLIEDGSEEKFYWAITREDRFGWCKGSGIND*ICENDTAKFVAACRA*SIMNIAGVKA*NNENDSMFLLSGLVVGLIVHSLVIAVFHTPSFDGPKMTMEKLLEYGHMIAQEKYNEQTVQLAAQYLSEAALGESHADASHSGSFYGK 654
            CL   D+D  A  +GGTT   V   MV     ++      V  P +  ++  P             LYAPLI DG  EKFYWA TREDR G CKG    D + +    + V      SI     ++A   +++    +  + V  I   LV +    P+FD PKMT+EKL+EYGHM+ QE+ N + VQLA +YLSEAALG+++ DA  +G+FYGK
Sbjct:  211 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 425          
BLAST of GO242251 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 9.129e-27
Identity = 83/214 (38.79%), Postives = 112/214 (52.34%), Query Frame = 1
Query:   10 SCLLF*DVDV*AVYLGGTTLMPVP-LMVAFFTFSLV*CTLLVTAP*LVQQKRQPGGATPCYRE*LPPLYAPLIEDGSEEKFYWAITREDRFGWCKGSGIND*ICENDTAKFVAACRA*SIMNIAGVKA*NNENDSMFLLSGLVVGLIVHSLVIAVFHTPSFDGPKMTMEKLLEYGHMIAQEKYNEQTVQLAAQYLSEAALGESHADASHSGSFY 648
            SCL   D+D  A  +GGTT   V   MV     ++      V  P +  ++  P             LYAPLI DG  EKFYWA TREDR G CKG    D + E    + V      SI     ++A   +++    +S   V  I   LV +    P+F+ PK+T+EKLLEYGHM+  E+ N + VQLA +YL+EAALGE++ DA  +GSF+
Sbjct:  219 SCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432          
The following BLAST results are available for this feature:
BLAST of GO242251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RCA_ARATH2.397e-3540.24Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU3.130e-3539.11Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ5.339e-3540.16Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL5.595e-3543.33Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR6.527e-3339.52Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU1.795e-2945.58Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU1.795e-2946.26Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO1.274e-2839.63Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU1.664e-2839.07Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE9.129e-2738.79Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank description899 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1050 5, mRNA sequence.