GO242248

Overview
NameGO242248
Unique NameGO242248
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242248 vs. ExPASy Swiss-Prot
Match: CAX3_ARATH (Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.354e-18
Identity = 49/90 (54.44%), Postives = 58/90 (64.44%), Query Frame = 3
Query:    3 LCVIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQDGTSHYMKGFVLLLCYFVIGACFFVSNRPLDSDPNGVKMGLQ--SSTGTVFRA 266
            L VI++WI+GI MDLNFN+LET S            QDGTSHYMKG VLLLCY +I ACFFV   P    PN + +GLQ  ++ G VF A
Sbjct:  373 LSVIVAWILGIKMDLNFNILETSSLALAIIITAFTLQDGTSHYMKGLVLLLCYVIIAACFFVDQIP---QPNDLDVGLQPMNNLGEVFSA 459          
BLAST of GO242248 vs. ExPASy Swiss-Prot
Match: CAX1A_ORYSJ (Vacuolar cation/proton exchanger 1a OS=Oryza sativa subsp. japonica GN=CAX1a PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 42/86 (48.84%), Postives = 58/86 (67.44%), Query Frame = 3
Query:    3 LCVIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQDGTSHYMKGFVLLLCYFVIGACFFVSNRPL-DSDPNGVKMGLQSSTGTV 257
            L V+++WIMG+ MDL+F LLETGS            QDGTSHY+KG +LLLCY VIGACFFV+ +P   ++ NG  + + + + +V
Sbjct:  363 LSVLVAWIMGVQMDLDFKLLETGSLFMAVLVTAFTLQDGTSHYLKGILLLLCYIVIGACFFVARQPAGHANSNGALLDVPTGSMSV 448          
BLAST of GO242248 vs. ExPASy Swiss-Prot
Match: CAX4_ARATH (Vacuolar cation/proton exchanger 4 OS=Arabidopsis thaliana GN=CAX4 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.212e-16
Identity = 40/64 (62.50%), Postives = 44/64 (68.75%), Query Frame = 3
Query:    9 VIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQDGTSHYMKGFVLLLCYFVIGACFFVSNRP 200
            V+++W MGI MDLNFNLLET              QDGTS+YMKG VLLLCY VI ACFFVSN P
Sbjct:  377 VLVAWTMGIEMDLNFNLLETACFALSILVTSLVLQDGTSNYMKGLVLLLCYVVIAACFFVSNSP 440          
BLAST of GO242248 vs. ExPASy Swiss-Prot
Match: CAX1_ARATH (Vacuolar cation/proton exchanger 1 OS=Arabidopsis thaliana GN=CAX1 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 8.212e-16
Identity = 41/85 (48.24%), Postives = 50/85 (58.82%), Query Frame = 3
Query:    3 LCVIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQDGTSHYMKGFVLLLCYFVIGACFFVSNRPLDSDPNGVKMGLQSSTGTV 257
            L +I++WI+GI MDLNF  LETG             QDG+SHYMKG VLLLCYF+I  CFFV   P     N + +G Q+    V
Sbjct:  371 LTIIVAWILGINMDLNFGPLETGCLAVSIIITAFTLQDGSSHYMKGLVLLLCYFIIAICFFVDKLP--QKQNAIHLGHQAMNNVV 453          
BLAST of GO242248 vs. ExPASy Swiss-Prot
Match: CAX1B_ORYSJ (Vacuolar cation/proton exchanger 1b OS=Oryza sativa subsp. japonica GN=CAX1b PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = 3
Query:    9 VIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQDGTSHYMKGFVLLLCYFVIGACFFVSNRPLDSDPNGV 224
            VI++W MGI MDL+FNLLETGS            Q+G SHY+KG +L+LCY VI  CFFV  R      +GV
Sbjct:  375 VIVAWTMGIPMDLDFNLLETGSLFLAILVTAFTLQEGESHYLKGLILVLCYAVISVCFFVIRRRSAGGTDGV 446          
BLAST of GO242248 vs. ExPASy Swiss-Prot
Match: CAX5_ARATH (Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 31/69 (44.93%), Postives = 40/69 (57.97%), Query Frame = 3
Query:    6 CVIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQDGTSHYMKGFVLLLCYFVIGACFFVSNRPLDSD 212
            CV+I W+MG  MDLNF L ET +            Q+GTS+Y KG +L+LCY ++ A FFV   P   D
Sbjct:  372 CVVIGWMMGAQMDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFVHEDPHQDD 440          
BLAST of GO242248 vs. ExPASy Swiss-Prot
Match: CAX3_ORYSJ (Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica GN=CAX3 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 31/69 (44.93%), Postives = 41/69 (59.42%), Query Frame = 3
Query:    6 CVIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQDGTSHYMKGFVLLLCYFVIGACFFVSNRPLDSD 212
            CV+I W+MG  MDLNF L ET +            QDG ++Y+KG +L+LCY ++ A FFV   P  SD
Sbjct:  348 CVVIGWMMGQKMDLNFQLFETATLFITVLVVAFMLQDGVANYLKGLMLILCYLIVAASFFVHVDPQSSD 416          
BLAST of GO242248 vs. ExPASy Swiss-Prot
Match: CAX2_ORYSJ (Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=CAX2 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 34/71 (47.89%), Postives = 42/71 (59.15%), Query Frame = 3
Query:    6 CVIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQDGTSHYMKGFVLLLCYFVIGACFFVSNRPLDSDPN 218
            CV+I WIMG  MDLNF L ET +            Q+GTS+Y KG +L+LCY ++ A FFV   P DS  N
Sbjct:  367 CVVIGWIMGQQMDLNFQLFETATLFITVLVVAFMLQEGTSNYFKGLMLILCYLIVAASFFVHVDP-DSSNN 436          
The following BLAST results are available for this feature:
BLAST of GO242248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CAX3_ARATH1.354e-1854.44Vacuolar cation/proton exchanger 3 OS=Arabidopsis ... [more]
CAX1A_ORYSJ5.687e-1748.84Vacuolar cation/proton exchanger 1a OS=Oryza sativ... [more]
CAX4_ARATH8.212e-1662.50Vacuolar cation/proton exchanger 4 OS=Arabidopsis ... [more]
CAX1_ARATH8.212e-1648.24Vacuolar cation/proton exchanger 1 OS=Arabidopsis ... [more]
CAX1B_ORYSJ7.686e-1451.39Vacuolar cation/proton exchanger 1b OS=Oryza sativ... [more]
CAX5_ARATH9.395e-1244.93Vacuolar cation/proton exchanger 5 OS=Arabidopsis ... [more]
CAX3_ORYSJ1.603e-1144.93Vacuolar cation/proton exchanger 3 OS=Oryza sativa... [more]
CAX2_ORYSJ2.093e-1147.89Vacuolar cation/proton exchanger 2 OS=Oryza sativa... [more]
back to top
Properties
Property NameValue
Genbank description896 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1047 5, mRNA sequence.