GO242093

Overview
NameGO242093
Unique NameGO242093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242093 vs. ExPASy Swiss-Prot
Match: SUCA_ORYSJ (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=Os07g0577700 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.757e-16
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 2
Query:    2 AGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGL 139
            AGAIVSGGKGTAQDKIK LREAGVTVVESPAKIG+ M E+FKQRG+
Sbjct:  284 AGAIVSGGKGTAQDKIKALREAGVTVVESPAKIGSTMFEIFKQRGM 329          
BLAST of GO242093 vs. ExPASy Swiss-Prot
Match: SUCA2_ARATH (Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=At5g23250 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.257e-15
Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 2
Query:    2 AGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGLTK 145
            AGAIVSGGKGTAQDKIK+LR+AGV VVESPAKIGAAM E+F++RGL K
Sbjct:  294 AGAIVSGGKGTAQDKIKSLRDAGVKVVESPAKIGAAMFELFQERGLLK 341          
BLAST of GO242093 vs. ExPASy Swiss-Prot
Match: SUCA1_ARATH (Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08300 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.495e-14
Identity = 38/48 (79.17%), Postives = 44/48 (91.67%), Query Frame = 2
Query:    2 AGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGLTK 145
            AGAIVSGGKGTAQDKIK+L +AGV VVESPAKIG+AM E+F++RGL K
Sbjct:  299 AGAIVSGGKGTAQDKIKSLNDAGVKVVESPAKIGSAMYELFQERGLLK 346          
The following BLAST results are available for this feature:
BLAST of GO242093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SUCA_ORYSJ7.757e-1686.96Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCA2_ARATH2.257e-1583.33Succinyl-CoA ligase [GDP-forming] subunit alpha-2,... [more]
SUCA1_ARATH2.495e-1479.17Succinyl-CoA ligase [GDP-forming] subunit alpha-1,... [more]
back to top
Properties
Property NameValue
Genbank description741 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 886 5, mRNA sequence.