GO242092

Overview
NameGO242092
Unique NameGO242092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of GO242092 vs. ExPASy Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.197e-30
Identity = 58/77 (75.32%), Postives = 64/77 (83.12%), Query Frame = 3 
Query:  177 QKMRSI*LINKGNKIASFKPYDGCLNYIGQNDKVLIAGFVRKGFAVGECPGVRFKVVKVSGVSLLALFKEKKEKPRS 407
            +K   + LI  G KIA+F P DGCLNYI +ND+VLIAGF RKG AVG+ PGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:   66 RKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142

HSP 2 Score: 36.1946 bits (82), Expect = 5.197e-30
Identity = 18/25 (72.00%), Postives = 18/25 (72.00%), Query Frame = 2 
Query:   65 KKSLLEGVWKTPFVGSSIAKGIVLE 139
            KKS L   WK PF GSS AKGIVLE
Sbjct:   28 KKSHLGNEWKKPFAGSSHAKGIVLE 52
[Close]
BLAST of GO242092 vs. ExPASy Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.197e-30
Identity = 58/77 (75.32%), Postives = 64/77 (83.12%), Query Frame = 3 
Query:  177 QKMRSI*LINKGNKIASFKPYDGCLNYIGQNDKVLIAGFVRKGFAVGECPGVRFKVVKVSGVSLLALFKEKKEKPRS 407
            +K   + LI  G KIA+F P DGCLNYI +ND+VLIAGF RKG AVG+ PGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:   66 RKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142

HSP 2 Score: 36.1946 bits (82), Expect = 5.197e-30
Identity = 18/25 (72.00%), Postives = 18/25 (72.00%), Query Frame = 2 
Query:   65 KKSLLEGVWKTPFVGSSIAKGIVLE 139
            KKS L   WK PF GSS AKGIVLE
Sbjct:   28 KKSHLGNEWKKPFAGSSHAKGIVLE 52
[Close]
BLAST of GO242092 vs. ExPASy Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.197e-30
Identity = 58/77 (75.32%), Postives = 64/77 (83.12%), Query Frame = 3 
Query:  177 QKMRSI*LINKGNKIASFKPYDGCLNYIGQNDKVLIAGFVRKGFAVGECPGVRFKVVKVSGVSLLALFKEKKEKPRS 407
            +K   + LI  G KIA+F P DGCLNYI +ND+VLIAGF RKG AVG+ PGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:   66 RKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142

HSP 2 Score: 36.1946 bits (82), Expect = 5.197e-30
Identity = 18/25 (72.00%), Postives = 18/25 (72.00%), Query Frame = 2 
Query:   65 KKSLLEGVWKTPFVGSSIAKGIVLE 139
            KKS L   WK PF GSS AKGIVLE
Sbjct:   28 KKSHLGNEWKKPFAGSSHAKGIVLE 52
[Close]
BLAST of GO242092 vs. ExPASy Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.607e-28
Identity = 58/77 (75.32%), Postives = 64/77 (83.12%), Query Frame = 3 
Query:  177 QKMRSI*LINKGNKIASFKPYDGCLNYIGQNDKVLIAGFVRKGFAVGECPGVRFKVVKVSGVSLLALFKEKKEKPRS 407
            +K   + LI  G KIA+F P DGCLNYI +ND+VLIAGF RKG AVG+ PGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:   66 RKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142

HSP 2 Score: 31.187 bits (69), Expect = 1.607e-28
Identity = 19/43 (44.19%), Postives = 22/43 (51.16%), Query Frame = 1 
Query:   64 KKIPPGRGLEDPFCWLFHCERDCS*GIGIEAY*PGSAIKKCAR 192
            KK   G   + PF    H +      IGIEA  P SAI+KCAR
Sbjct:   28 KKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPNSAIRKCAR 70
[Close]
BLAST of GO242092 vs. ExPASy Swiss-Prot
Match: RS23_ASPFU (40S ribosomal protein S23 OS=Aspergillus fumigatus GN=rps23 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.083e-25
Identity = 51/77 (66.23%), Postives = 61/77 (79.22%), Query Frame = 3 
Query:  177 QKMRSI*LINKGNKIASFKPYDGCLNYIGQNDKVLIAGFVRKGFAVGECPGVRFKVVKVSGVSLLALFKEKKEKPRS 407
            +K   + LI  G K+ +F P DGCLN+I +ND+VL+AGF RKG A G+ PGVRFKVVKVSGV LLAL+KEKKEKPRS
Sbjct:   69 RKCVKVQLIKNGKKVTAFVPNDGCLNFIDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVGLLALWKEKKEKPRS 145

HSP 2 Score: 26.9498 bits (58), Expect = 2.083e-25
Identity = 16/26 (61.54%), Postives = 19/26 (73.08%), Query Frame = 2 
Query:   65 KKSLLEGVWKT-PFVGSSIAKGIVLE 139
            KK LL   +K+ PF G+S AKGIVLE
Sbjct:   30 KKRLLGTAFKSSPFGGASHAKGIVLE 55

HSP 3 Score: 24.6386 bits (52), Expect = 2.083e-25
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 1 
Query:  142 IGIEAY*PGSAIKKCAR 192
            +G+EA  P SAI+KC +
Sbjct:   57 VGVEAKQPNSAIRKCVK 73
[Close]
BLAST of GO242092 vs. ExPASy Swiss-Prot
Match: RS23_YEAST (40S ribosomal protein S23 OS=Saccharomyces cerevisiae GN=RPS23A PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.667e-25
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 3 
Query:  198 LINKGNKIASFKPYDGCLNYIGQNDKVLIAGFVRKGFAVGECPGVRFKVVKVSGVSLLALFKEKKEKPRS 407
            LI  G K+ +F P DGCLN++ +ND+VL+AGF RKG A G+ PGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:   76 LIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145

HSP 2 Score: 28.4906 bits (62), Expect = 9.667e-25
Identity = 24/55 (43.64%), Postives = 27/55 (49.09%), Query Frame = 2 
Query:   65 KKSLLEGVWKT-PFVGSSIAKGIVLEA---------SVSRHIDRAPLSKNALDLT 199
            KK LL   +K+ PF GSS AKGIVLE          S  R   R  L KN   +T
Sbjct:   30 KKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVT 84
[Close]
BLAST of GO242092 vs. ExPASy Swiss-Prot
Match: RS23_SACCA (40S ribosomal protein S23 OS=Saccharomyces castellii GN=RPS23A PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.667e-25
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 3 
Query:  198 LINKGNKIASFKPYDGCLNYIGQNDKVLIAGFVRKGFAVGECPGVRFKVVKVSGVSLLALFKEKKEKPRS 407
            LI  G K+ +F P DGCLN++ +ND+VL+AGF RKG A G+ PGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:   76 LIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145

HSP 2 Score: 28.4906 bits (62), Expect = 9.667e-25
Identity = 24/55 (43.64%), Postives = 27/55 (49.09%), Query Frame = 2 
Query:   65 KKSLLEGVWKT-PFVGSSIAKGIVLEA---------SVSRHIDRAPLSKNALDLT 199
            KK LL   +K+ PF GSS AKGIVLE          S  R   R  L KN   +T
Sbjct:   30 KKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVT 84
[Close]
BLAST of GO242092 vs. ExPASy Swiss-Prot
Match: RS23_SACBA (40S ribosomal protein S23 OS=Saccharomyces bayanus GN=RPS23A PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.667e-25
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 3 
Query:  198 LINKGNKIASFKPYDGCLNYIGQNDKVLIAGFVRKGFAVGECPGVRFKVVKVSGVSLLALFKEKKEKPRS 407
            LI  G K+ +F P DGCLN++ +ND+VL+AGF RKG A G+ PGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:   76 LIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145

HSP 2 Score: 28.4906 bits (62), Expect = 9.667e-25
Identity = 24/55 (43.64%), Postives = 27/55 (49.09%), Query Frame = 2 
Query:   65 KKSLLEGVWKT-PFVGSSIAKGIVLEA---------SVSRHIDRAPLSKNALDLT 199
            KK LL   +K+ PF GSS AKGIVLE          S  R   R  L KN   +T
Sbjct:   30 KKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVT 84
[Close]
BLAST of GO242092 vs. ExPASy Swiss-Prot
Match: RS23_CANGA (40S ribosomal protein S23 OS=Candida glabrata GN=RPS23 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.667e-25
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 3 
Query:  198 LINKGNKIASFKPYDGCLNYIGQNDKVLIAGFVRKGFAVGECPGVRFKVVKVSGVSLLALFKEKKEKPRS 407
            LI  G K+ +F P DGCLN++ +ND+VL+AGF RKG A G+ PGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:   76 LIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145

HSP 2 Score: 28.4906 bits (62), Expect = 9.667e-25
Identity = 24/55 (43.64%), Postives = 27/55 (49.09%), Query Frame = 2 
Query:   65 KKSLLEGVWKT-PFVGSSIAKGIVLEA---------SVSRHIDRAPLSKNALDLT 199
            KK LL   +K+ PF GSS AKGIVLE          S  R   R  L KN   +T
Sbjct:   30 KKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVT 84
[Close]
BLAST of GO242092 vs. ExPASy Swiss-Prot
Match: RS23_DERVA (40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.637e-24
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 3 
Query:  198 LINKGNKIASFKPYDGCLNYIGQNDKVLIAGFVRKGFAVGECPGVRFKVVKVSGVSLLALFKEKKEKPRS 407
            LI  G KI +F P DGCLNYI +ND+VL+AGF RKG AVG+ PGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:   74 LIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143

HSP 2 Score: 26.1794 bits (56), Expect = 1.637e-24
Identity = 13/33 (39.39%), Postives = 18/33 (54.55%), Query Frame = 1 
Query:   94 DPFCWLFHCERDCS*GIGIEAY*PGSAIKKCAR 192
            +PF    H +      +G+EA  P SAI+KC R
Sbjct:   39 NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 71
The following BLAST results are available for this feature:
BLAST of GO242092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
RS23_FRAAN5.197e-3075.3240S ribosomal protein S23 OS=Fragaria ananassa GN=... [more]
RS23_EUPES5.197e-3075.3240S ribosomal protein S23 OS=Euphorbia esula GN=RP... [more]
RS232_ARATH5.197e-3075.3240S ribosomal protein S23-2 OS=Arabidopsis thalian... [more]
RS231_ARATH1.607e-2875.3240S ribosomal protein S23-1 OS=Arabidopsis thalian... [more]
RS23_ASPFU2.083e-2566.2340S ribosomal protein S23 OS=Aspergillus fumigatus... [more]
RS23_YEAST9.667e-2571.4340S ribosomal protein S23 OS=Saccharomyces cerevis... [more]
RS23_SACCA9.667e-2571.4340S ribosomal protein S23 OS=Saccharomyces castell... [more]
RS23_SACBA9.667e-2571.4340S ribosomal protein S23 OS=Saccharomyces bayanus... [more]
RS23_CANGA9.667e-2571.4340S ribosomal protein S23 OS=Candida glabrata GN=R... [more]
RS23_DERVA1.637e-2472.8640S ribosomal protein S23 OS=Dermacentor variabili... [more]

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Properties
Property NameValue
Genbank description740 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 885 5, mRNA sequence.