GO242090

Overview
NameGO242090
Unique NameGO242090
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242090 vs. ExPASy Swiss-Prot
Match: CALR3_ARATH (Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 3.198e-30
Identity = 57/70 (81.43%), Postives = 65/70 (92.86%), Query Frame = 2
Query:    2 RPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEE 211
            + KRIKNPNYKGKWK P+IDNPEFEDDPDLYVLK IKY GIEVWQVKAGS++DNILICDDPAYA+ +V++
Sbjct:  286 KAKRIKNPNYKGKWKNPWIDNPEFEDDPDLYVLKSIKYAGIEVWQVKAGSIFDNILICDDPAYARSIVDD 355          
BLAST of GO242090 vs. ExPASy Swiss-Prot
Match: CALR_NICPL (Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.322e-27
Identity = 49/70 (70.00%), Postives = 62/70 (88.57%), Query Frame = 2
Query:    2 RPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEE 211
            +PK+IKNPNYKGKWK P IDNP+F+DDPDLYV   +KYVG+E+WQVK+G+++DNI+ICDDP YAK + EE
Sbjct:  285 KPKKIKNPNYKGKWKAPLIDNPDFKDDPDLYVFPKLKYVGVELWQVKSGTLFDNIVICDDPEYAKAIAEE 354          
BLAST of GO242090 vs. ExPASy Swiss-Prot
Match: CALR_BERST (Calreticulin OS=Berberis stolonifera PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.257e-26
Identity = 48/70 (68.57%), Postives = 63/70 (90.00%), Query Frame = 2
Query:    2 RPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEE 211
            +PK+IKNPN+KGKWK P IDNP+F+DDPD+YV   +KYVGIE+WQVK+G+++DN+LICDDP YAK++ EE
Sbjct:  280 KPKKIKNPNFKGKWKAPMIDNPDFKDDPDIYVFPKLKYVGIELWQVKSGTMFDNVLICDDPDYAKKLAEE 349          
BLAST of GO242090 vs. ExPASy Swiss-Prot
Match: CALR_RICCO (Calreticulin OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.145e-26
Identity = 48/70 (68.57%), Postives = 63/70 (90.00%), Query Frame = 2
Query:    2 RPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEE 211
            +PK+IKNPNYKGKWK P IDNP+F+DDP++YV   +KYVGIE+WQVK+G+++DN+LIC+DP YAKQ+ EE
Sbjct:  278 KPKKIKNPNYKGKWKAPMIDNPDFKDDPEIYVYPNLKYVGIELWQVKSGTLFDNVLICNDPEYAKQLAEE 347          
BLAST of GO242090 vs. ExPASy Swiss-Prot
Match: CALR_BETVU (Calreticulin OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.659e-26
Identity = 47/70 (67.14%), Postives = 62/70 (88.57%), Query Frame = 2
Query:    2 RPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEE 211
            + K+IKNPNYKGKWK P IDNPEF+DDP+LYV   ++YVG+E+WQVK+G+++DN+L+CDDP YAKQ+ EE
Sbjct:  283 KAKKIKNPNYKGKWKAPMIDNPEFKDDPELYVYPKLRYVGVELWQVKSGTLFDNVLVCDDPEYAKQLAEE 352          
BLAST of GO242090 vs. ExPASy Swiss-Prot
Match: CALR2_ARATH (Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=1 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 4.778e-26
Identity = 47/70 (67.14%), Postives = 63/70 (90.00%), Query Frame = 2
Query:    2 RPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEE 211
            +PK+IKNPNYKGKW+ P IDNP+F+DDP+LYV   +KYVG+E+WQVK+GS++DN+LICDDP YAK++ +E
Sbjct:  280 KPKQIKNPNYKGKWEAPLIDNPDFKDDPELYVFPKLKYVGLELWQVKSGSLFDNVLICDDPDYAKKLADE 349          
BLAST of GO242090 vs. ExPASy Swiss-Prot
Match: CALR_PRUAR (Calreticulin OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.390e-25
Identity = 49/70 (70.00%), Postives = 62/70 (88.57%), Query Frame = 2
Query:    2 RPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEE 211
            +PK+IKNPN+KGKWK P IDNPEF+DDP+LYV   +KYVGIE+WQVK+G+++DNILI D+P YAKQ+ EE
Sbjct:  282 KPKKIKNPNFKGKWKAPLIDNPEFKDDPELYVYPNLKYVGIELWQVKSGTLFDNILITDEPEYAKQLAEE 351          
BLAST of GO242090 vs. ExPASy Swiss-Prot
Match: CALR1_ARATH (Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.371e-25
Identity = 47/70 (67.14%), Postives = 61/70 (87.14%), Query Frame = 2
Query:    2 RPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEE 211
            +PK+IKNP YKGKWK P IDNPEF+DDP+LYV   +KYVG+E+WQVK+GS++DN+L+ DDP YAK++ EE
Sbjct:  280 KPKKIKNPAYKGKWKAPMIDNPEFKDDPELYVFPKLKYVGVELWQVKSGSLFDNVLVSDDPEYAKKLAEE 349          
BLAST of GO242090 vs. ExPASy Swiss-Prot
Match: CALR_MAIZE (Calreticulin OS=Zea mays GN=CRT PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.186e-22
Identity = 43/70 (61.43%), Postives = 57/70 (81.43%), Query Frame = 2
Query:    2 RPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEE 211
            + K+IKNPNY+GKWK P IDNP+F+DDP +Y    +KY+GIE+WQVK+G+++DNI+I DDPA AK   EE
Sbjct:  283 KQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPALAKTFAEE 352          
BLAST of GO242090 vs. ExPASy Swiss-Prot
Match: CALR_ORYSJ (Calreticulin OS=Oryza sativa subsp. japonica GN=Os07g0246200 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.713e-21
Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = 2
Query:    2 RPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEE 211
            + K+IKNPNY+GKWK P IDNP+F+DDP +Y    +KY+GIE+WQVK+G+++DN LI DDP  AK   EE
Sbjct:  287 KQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNFLITDDPELAKTFAEE 356          
The following BLAST results are available for this feature:
BLAST of GO242090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
CALR3_ARATH3.198e-3081.43Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=... [more]
CALR_NICPL4.322e-2770.00Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 ... [more]
CALR_BERST1.257e-2668.57Calreticulin OS=Berberis stolonifera PE=2 SV=1[more]
CALR_RICCO2.145e-2668.57Calreticulin OS=Ricinus communis PE=2 SV=1[more]
CALR_BETVU3.659e-2667.14Calreticulin OS=Beta vulgaris PE=2 SV=1[more]
CALR2_ARATH4.778e-2667.14Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=... [more]
CALR_PRUAR1.390e-2570.00Calreticulin OS=Prunus armeniaca PE=2 SV=1[more]
CALR1_ARATH2.371e-2567.14Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=... [more]
CALR_MAIZE4.186e-2261.43Calreticulin OS=Zea mays GN=CRT PE=2 SV=1[more]
CALR_ORYSJ2.713e-2160.00Calreticulin OS=Oryza sativa subsp. japonica GN=Os... [more]

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Properties
Property NameValue
Genbank description738 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 883 5, mRNA sequence.