GO242084

Overview
NameGO242084
Unique NameGO242084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242084 vs. ExPASy Swiss-Prot
Match: PP131_ARATH (Pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Arabidopsis thaliana GN=At1g79080 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.847e-29
Identity = 61/94 (64.89%), Postives = 82/94 (87.23%), Query Frame = 2
Query:    2 VMEEYDY-KPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESTVERLVMQYDFE 280
            +MEE +  KP VDNFNA++LGLCK RRTDL++EVF+MM+EK +MPNETTY ILVEGIAH+DELEL+ EVL EL+LR+V+ ++ V+R+VMQ++ +
Sbjct:  483 IMEESENCKPTVDNFNAMILGLCKIRRTDLAMEVFEMMVEKKRMPNETTYAILVEGIAHEDELELAKEVLDELRLRKVIGQNAVDRIVMQFNLD 576          
BLAST of GO242084 vs. ExPASy Swiss-Prot
Match: PPR28_ARATH (Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.571e-12
Identity = 33/84 (39.29%), Postives = 58/84 (69.05%), Query Frame = 2
Query:    8 EEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESTVERL 259
            E    +P+   FN+++LGLCKSR+TD +++    MI +G  PNET+YTIL+EG+A++   + + E+L EL  + ++ +S+ E++
Sbjct:  511 ERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLMKKSSAEQV 594          
The following BLAST results are available for this feature:
BLAST of GO242084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PP131_ARATH1.847e-2964.89Pentatricopeptide repeat-containing protein At1g79... [more]
PPR28_ARATH1.571e-1239.29Pentatricopeptide repeat-containing protein At1g09... [more]
back to top
Properties
Property NameValue
Genbank description732 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 877 5, mRNA sequence.