GO242077

Overview
NameGO242077
Unique NameGO242077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242077 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.117e-12
Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = 1
Query:   13 IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDRT 330
            + +N   R  E    PP+    +E  +++YVGN+ W +    L   F   G VVSARV++DR+   +R FGF++ +S+AE  DA  +L+G    GRTI V    DR+
Sbjct:  207 LTVNKAARRGERPERPPR---TFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRS 310          
BLAST of GO242077 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.945e-11
Identity = 32/83 (38.55%), Postives = 51/83 (61.45%), Query Frame = 1
Query:   82 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTDFRGRTIIVREGVDR 327
            E  ++ +VG L+WA   EDL+  F +FG V+ +++++DR+   +R FGF++F  + A RDA   +NG +  GR I V E   R
Sbjct:    3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85          
The following BLAST results are available for this feature:
BLAST of GO242077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ROC4_NICSY4.117e-1237.3831 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
GRP8_ARATH5.945e-1138.55Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank description725 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 870 5, mRNA sequence.