GO242076

Overview
NameGO242076
Unique NameGO242076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242076 vs. ExPASy Swiss-Prot
Match: EF1B_ORYSJ (Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 1.884e-39
Identity = 79/87 (90.80%), Postives = 83/87 (95.40%), Query Frame = 1
Query:   88 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 348
            VLLDVKPWDDETDMKKLEEAVRSV+M GL WGASKLVPVGYGIKKLQIM+TIVDDLVSVDSLIEEHLT EP NE++QSCDIVAFNKI
Sbjct:  138 VLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCDIVAFNKI 224          
BLAST of GO242076 vs. ExPASy Swiss-Prot
Match: EF1B2_ARATH (Elongation factor 1-beta 2 OS=Arabidopsis thaliana GN=At5g19510 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.554e-38
Identity = 77/87 (88.51%), Postives = 81/87 (93.10%), Query Frame = 1
Query:   88 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 348
            VL+DVKPWDDETDMKKLEEAVR VEMPGLFWGASKLVPVGYGIKKL IM TIVDDLVS D+LIE+ LT+EP NEYIQSCDIVAFNKI
Sbjct:  138 VLMDVKPWDDETDMKKLEEAVRGVEMPGLFWGASKLVPVGYGIKKLTIMFTIVDDLVSPDNLIEDFLTSEPNNEYIQSCDIVAFNKI 224          
BLAST of GO242076 vs. ExPASy Swiss-Prot
Match: EF1D2_ARATH (Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.062e-38
Identity = 73/87 (83.91%), Postives = 81/87 (93.10%), Query Frame = 1
Query:   88 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 348
            VL+D+KPWDDETDMKKLEEAVRS++M GLFWGASKLVPVGYGIKKL IM TIVDDLVS+D++IEE LT EP NEY+QSCDIVAFNKI
Sbjct:  145 VLMDIKPWDDETDMKKLEEAVRSIQMEGLFWGASKLVPVGYGIKKLHIMCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231          
BLAST of GO242076 vs. ExPASy Swiss-Prot
Match: EF1D1_ARATH (Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 7.917e-38
Identity = 72/87 (82.76%), Postives = 82/87 (94.25%), Query Frame = 1
Query:   88 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 348
            VL+D+KPWDDETDMKKLEEAV+S++M GLFWGASKLVPVGYGIKKLQI+ TIVDDLVS+D++IEE LT EP NEY+QSCDIVAFNKI
Sbjct:  145 VLIDIKPWDDETDMKKLEEAVKSIQMEGLFWGASKLVPVGYGIKKLQILCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231          
BLAST of GO242076 vs. ExPASy Swiss-Prot
Match: EF1B1_ARATH (Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 7.917e-38
Identity = 77/87 (88.51%), Postives = 83/87 (95.40%), Query Frame = 1
Query:   88 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 348
            VLL+VKPWDDETDMKKLEEAVRSV+MPGL WGASKLVPVGYGIKKL IM+TIVDDLVSVD+LIE+HLT+EP NEYIQS DIVAFNKI
Sbjct:  142 VLLEVKPWDDETDMKKLEEAVRSVQMPGLTWGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDHLTSEPNNEYIQSVDIVAFNKI 228          
BLAST of GO242076 vs. ExPASy Swiss-Prot
Match: EF1D_PIMBR (Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 1.764e-37
Identity = 75/87 (86.21%), Postives = 81/87 (93.10%), Query Frame = 1
Query:   88 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 348
            VLLDVKPWDDETDM KLEEAVRS++M GL WGASKLV VGYGIKKLQIM+TIVDDLVSVD L+E++LTAEP NEYIQSCDIVAFNKI
Sbjct:  140 VLLDVKPWDDETDMTKLEEAVRSIKMDGLLWGASKLVAVGYGIKKLQIMLTIVDDLVSVDDLVEDYLTAEPANEYIQSCDIVAFNKI 226          
BLAST of GO242076 vs. ExPASy Swiss-Prot
Match: EF1D1_ORYSJ (Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 6.702e-37
Identity = 75/87 (86.21%), Postives = 80/87 (91.95%), Query Frame = 1
Query:   88 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 348
            VLLDVKPWDDETDM KLEEAVR+V+M GL WGASKLVPVGYGIKKLQIM+TIVDDLVSVDSLIE++   EP NEYIQSCDIVAFNKI
Sbjct:  143 VLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDIVAFNKI 229          
BLAST of GO242076 vs. ExPASy Swiss-Prot
Match: EF1D2_ORYSJ (Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 1.950e-36
Identity = 74/87 (85.06%), Postives = 80/87 (91.95%), Query Frame = 1
Query:   88 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 348
            VLLDVKPWDDETDM KLEEAVR+V+M GL WGASKLVPVGYGIKKLQIM+TIVDDLVSVDSLIE++   EP NE+IQSCDIVAFNKI
Sbjct:  140 VLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDIVAFNKI 226          
BLAST of GO242076 vs. ExPASy Swiss-Prot
Match: EF1D_BETVU (Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 9.678e-36
Identity = 74/87 (85.06%), Postives = 80/87 (91.95%), Query Frame = 1
Query:   88 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 348
            VLLDVKPWDDETDMKKLEEAVRSV+  GL  GASKLVPVGYGIKKL IM+TIVDDLVSVD+LIE++LT EP NEY+QSCDIVAFNKI
Sbjct:  145 VLLDVKPWDDETDMKKLEEAVRSVQQEGLTLGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDYLTVEPINEYVQSCDIVAFNKI 231          
BLAST of GO242076 vs. ExPASy Swiss-Prot
Match: EF1B_WHEAT (Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 2.914e-32
Identity = 68/87 (78.16%), Postives = 75/87 (86.21%), Query Frame = 1
Query:   88 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 348
            VL+D+KPWDDETDMKKLEEAVRSV+M GL WGASKL+PVGYGIKKLQIM+TI+DDL S    IEE L   P NEY+QSCDIVAFNKI
Sbjct:  132 VLMDIKPWDDETDMKKLEEAVRSVQMEGLTWGASKLMPVGYGIKKLQIMLTIIDDLASTP--IEEVLCEAPINEYVQSCDIVAFNKI 216          
The following BLAST results are available for this feature:
BLAST of GO242076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF1B_ORYSJ1.884e-3990.80Elongation factor 1-beta OS=Oryza sativa subsp. ja... [more]
EF1B2_ARATH3.554e-3888.51Elongation factor 1-beta 2 OS=Arabidopsis thaliana... [more]
EF1D2_ARATH6.062e-3883.91Elongation factor 1-delta 2 OS=Arabidopsis thalian... [more]
EF1D1_ARATH7.917e-3882.76Elongation factor 1-delta 1 OS=Arabidopsis thalian... [more]
EF1B1_ARATH7.917e-3888.51Elongation factor 1-beta 1 OS=Arabidopsis thaliana... [more]
EF1D_PIMBR1.764e-3786.21Elongation factor 1-delta OS=Pimpinella brachycarp... [more]
EF1D1_ORYSJ6.702e-3786.21Elongation factor 1-delta 1 OS=Oryza sativa subsp.... [more]
EF1D2_ORYSJ1.950e-3685.06Elongation factor 1-delta 2 OS=Oryza sativa subsp.... [more]
EF1D_BETVU9.678e-3685.06Elongation factor 1-delta OS=Beta vulgaris PE=2 SV... [more]
EF1B_WHEAT2.914e-3278.16Elongation factor 1-beta OS=Triticum aestivum PE=1... [more]

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Properties
Property NameValue
Genbank description724 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 869 5, mRNA sequence.