GO242074

Overview
NameGO242074
Unique NameGO242074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242074 vs. ExPASy Swiss-Prot
Match: PSAF_ARATH (Photosystem I reaction center subunit III, chloroplastic OS=Arabidopsis thaliana GN=PSAF PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 6.587e-38
Identity = 71/80 (88.75%), Postives = 77/80 (96.25%), Query Frame = 1
Query:    1 GDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVLLASRLVFRGFSWPVAAYREFVNGELVVKDV 240
            GDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDV LASR++FRGF WPVAAYREF+NG+L+ KDV
Sbjct:  142 GDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRIIFRGFIWPVAAYREFLNGDLIAKDV 221          
BLAST of GO242074 vs. ExPASy Swiss-Prot
Match: PSAF_HORVU (Photosystem I reaction center subunit III, chloroplastic OS=Hordeum vulgare GN=PSAF PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 8.903e-35
Identity = 66/79 (83.54%), Postives = 74/79 (93.67%), Query Frame = 1
Query:    1 GDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVLLASRLVFRGFSWPVAAYREFVNGELVVKD 237
            GDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIA+SGEKKPAM+EIIIDV LA+R++ RGF WPVAAYRE +NG+LVV D
Sbjct:  152 GDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDD 230          
BLAST of GO242074 vs. ExPASy Swiss-Prot
Match: PSAF_FLATR (Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia GN=PSAF PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 9.843e-34
Identity = 64/76 (84.21%), Postives = 71/76 (93.42%), Query Frame = 1
Query:    1 GDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVLLASRLVFRGFSWPVAAYREFVNGELV 228
            GDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIAI  EKKP  KEIIIDV LA++L+FRGFSWPVAAYRE++NGEL+
Sbjct:  153 GDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLATKLLFRGFSWPVAAYREYLNGELI 228          
BLAST of GO242074 vs. ExPASy Swiss-Prot
Match: PSAF_SPIOL (Photosystem I reaction center subunit III, chloroplastic OS=Spinacia oleracea GN=PSAF PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.679e-33
Identity = 66/76 (86.84%), Postives = 69/76 (90.79%), Query Frame = 1
Query:    1 GDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVLLASRLVFRGFSWPVAAYREFVNGELV 228
            GDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIAI  EKKP  KEIIIDV LAS L+FRGFSWPVAAYRE +NGELV
Sbjct:  152 GDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLASSLLFRGFSWPVAAYRELLNGELV 227          
BLAST of GO242074 vs. ExPASy Swiss-Prot
Match: PSAF_SYNP6 (Photosystem I reaction center subunit III OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psaF PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.248e-20
Identity = 46/74 (62.16%), Postives = 57/74 (77.03%), Query Frame = 1
Query:   13 HWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVLLASRLVFRGFSWPVAAYREFVNGELVVK 234
            H G+FI P LLFLYIAGWIGWVGRSYL AI  +K  A KEI+IDV LA +    GF+WP+AA++EF +G+L+ K
Sbjct:   77 HAGDFIIPSLLFLYIAGWIGWVGRSYLQAIKSDKDAAGKEIVIDVPLAVKFSLTGFAWPLAAFQEFSSGKLLAK 150          
BLAST of GO242074 vs. ExPASy Swiss-Prot
Match: PSAF_SYNY3 (Photosystem I reaction center subunit III OS=Synechocystis sp. (strain PCC 6803) GN=psaF PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.194e-20
Identity = 43/75 (57.33%), Postives = 57/75 (76.00%), Query Frame = 1
Query:   13 HWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVLLASRLVFRGFSWPVAAYREFVNGELVVKD 237
            H G+F+ P +LFLYIAGWIGWVGRSYLI I   K P M+E++I+V LA + +  GF WP+AA  E+ +G+LV+KD
Sbjct:   83 HAGDFLIPSILFLYIAGWIGWVGRSYLIEIRESKNPEMQEVVINVPLAIKKMLGGFLWPLAAVGEYTSGKLVMKD 157          
BLAST of GO242074 vs. ExPASy Swiss-Prot
Match: PSAF_PORYE (Photosystem I reaction center subunit III OS=Porphyra yezoensis GN=psaF PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.057e-19
Identity = 40/73 (54.79%), Postives = 57/73 (78.08%), Query Frame = 1
Query:   19 GEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVLLASRLVFRGFSWPVAAYREFVNGELVVKD 237
            G+F+ PGLLFLYI GWIGWVGR YL++++   KP  KEII+DV LA + +  GF+WP+AA++EF +G+L+  +
Sbjct:  101 GDFVFPGLLFLYITGWIGWVGRGYLLSVAKTSKPTEKEIILDVPLAIKFMSSGFAWPLAAWQEFSSGQLIASN 173          
BLAST of GO242074 vs. ExPASy Swiss-Prot
Match: PSAF_PORPU (Photosystem I reaction center subunit III OS=Porphyra purpurea GN=psaF PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.380e-19
Identity = 40/70 (57.14%), Postives = 56/70 (80.00%), Query Frame = 1
Query:   19 GEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVLLASRLVFRGFSWPVAAYREFVNGELV 228
            G+F+ PGLLFLYI GWIGWVGR YL++++   KP  KEII+DV LA + +  GF+WP+AA++EF +G+L+
Sbjct:  105 GDFVFPGLLFLYITGWIGWVGRGYLLSVAKTSKPTEKEIILDVPLAVKFMSSGFAWPLAAWQEFSSGQLI 174          
BLAST of GO242074 vs. ExPASy Swiss-Prot
Match: PSAF_GRATL (Photosystem I reaction center subunit III OS=Gracilaria tenuistipitata var. liui GN=psaF PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.802e-19
Identity = 47/82 (57.32%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    1 GDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVLLASRLVFRGFSWPVAAYREFVNGELVV--KDV 240
            G   H GEF+ PG+LFLYI GWIGWVGR YL  IS   KP  KEII+DV LA +    GF+WP+AA +E  +GELV   KD+
Sbjct:  101 GRWNHAGEFMIPGVLFLYITGWIGWVGRGYLRDISQTTKPTEKEIILDVPLALKYCLSGFTWPLAAIKELTSGELVADNKDI 182          
BLAST of GO242074 vs. ExPASy Swiss-Prot
Match: PSAF_GUITH (Photosystem I reaction center subunit III OS=Guillardia theta GN=psaF PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.015e-19
Identity = 43/79 (54.43%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    1 GDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVLLASRLVFRGFSWPVAAYREFVNGELVVKD 237
            G   H GEF+ PGL FLYIAGWIGWVGR+Y+   S   KP  KEIIIDV +A   +  G+ WP AA++EF +G L+ K+
Sbjct:   97 GRWSHAGEFMVPGLFFLYIAGWIGWVGRNYVQFASQTDKPTEKEIIIDVPVALSFISTGYIWPFAAFKEFTSGNLIAKE 175          
The following BLAST results are available for this feature:
BLAST of GO242074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
PSAF_ARATH6.587e-3888.75Photosystem I reaction center subunit III, chlorop... [more]
PSAF_HORVU8.903e-3583.54Photosystem I reaction center subunit III, chlorop... [more]
PSAF_FLATR9.843e-3484.21Photosystem I reaction center subunit III, chlorop... [more]
PSAF_SPIOL1.679e-3386.84Photosystem I reaction center subunit III, chlorop... [more]
PSAF_SYNP61.248e-2062.16Photosystem I reaction center subunit III OS=Synec... [more]
PSAF_SYNY36.194e-2057.33Photosystem I reaction center subunit III OS=Synec... [more]
PSAF_PORYE1.057e-1954.79Photosystem I reaction center subunit III OS=Porph... [more]
PSAF_PORPU1.380e-1957.14Photosystem I reaction center subunit III OS=Porph... [more]
PSAF_GRATL1.802e-1957.32Photosystem I reaction center subunit III OS=Graci... [more]
PSAF_GUITH4.015e-1954.43Photosystem I reaction center subunit III OS=Guill... [more]

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Properties
Property NameValue
Genbank description722 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 867 5, mRNA sequence.