GO242073

Overview
NameGO242073
Unique NameGO242073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242073 vs. ExPASy Swiss-Prot
Match: PGL1A_ARATH (PGR5-like protein 1A, chloroplastic OS=Arabidopsis thaliana GN=PGRL1A PE=1 SV=1)

HSP 1 Score: 433.721 bits (1114), Expect = 8.456e-121
Identity = 207/251 (82.47%), Postives = 236/251 (94.02%), Query Frame = 1
Query:   10 VDSKILQYCSIDKKEKKSLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQKLKMEGSEIVVEGPRCSLRSRKVYSDLSVDYLKMLLLNVPATVVALGLFFFLDDITGFEITYLLELPEPFSFIFTWFAAVPLIVYLSQSLTKLIVRDSLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTRLITLPEGSEA 762
            VDS +L YCSI+K EKK++GE+EQEFLQALQ+FYY+GKA+MSNEEFDNLKEELMWEGSSVVMLSS EQ+FLEASMAYV+G PI++DEEYDKLK KLK++GS+IV EGPRCSLRS+KVYSDL+VDY KMLLLNVPATVVALGLFFFLDDITGFEITY++ELPEP+SFIFTWFAAVP+IVYL+ S+TKLI++D LILKGPCPNCGTEN SFFGTILSISSGG TNT+ C+NCGT MVYDS +RLITLPEGS+A
Sbjct:   74 VDSNVLPYCSINKAEKKTIGEMEQEFLQALQSFYYDGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSGNPILNDEEYDKLKLKLKIDGSDIVSEGPRCSLRSKKVYSDLAVDYFKMLLLNVPATVVALGLFFFLDDITGFEITYIMELPEPYSFIFTWFAAVPVIVYLALSITKLIIKDFLILKGPCPNCGTENTSFFGTILSISSGGKTNTVKCTNCGTAMVYDSGSRLITLPEGSQA 324          
BLAST of GO242073 vs. ExPASy Swiss-Prot
Match: PGL1B_ARATH (PGR5-like protein 1B, chloroplastic OS=Arabidopsis thaliana GN=PGRL1B PE=1 SV=1)

HSP 1 Score: 430.254 bits (1105), Expect = 9.349e-120
Identity = 209/253 (82.61%), Postives = 231/253 (91.30%), Query Frame = 1
Query:    4 EVVDSKILQYCSIDKKEKKSLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQKLKMEGSEIVVEGPRCSLRSRKVYSDLSVDYLKMLLLNVPATVVALGLFFFLDDITGFEITYLLELPEPFSFIFTWFAAVPLIVYLSQSLTKLIVRDSLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTRLITLPEGSEA 762
            E VDSKIL YCSI+K EK+++GE+EQEFLQA+Q+FYYEGKA+MSNEEFDNLKEELMWEGSSVVMLSS EQ+FLEASMAYV+G PI+SDEEYDKLK KLKM+GSEIV EGPRCSLRS+KVYSDL++DY KM LLNVPATVVALGLFFFLDDITGFEITYLLELPEPFSFIFTWFAAVP IVYL+ SLTKLI++D LILKGPCPNCGTENVSFFGTILSI +   TN + CS CGT MVYDS +RLITLPEG +A
Sbjct:   61 EEVDSKILPYCSINKNEKRTIGEMEQEFLQAMQSFYYEGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSGNPILSDEEYDKLKMKLKMDGSEIVCEGPRCSLRSKKVYSDLAIDYFKMFLLNVPATVVALGLFFFLDDITGFEITYLLELPEPFSFIFTWFAAVPAIVYLALSLTKLILKDFLILKGPCPNCGTENVSFFGTILSIPNDSNTNNVKCSGCGTEMVYDSGSRLITLPEGGKA 313          
The following BLAST results are available for this feature:
BLAST of GO242073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PGL1A_ARATH8.456e-12182.47PGR5-like protein 1A, chloroplastic OS=Arabidopsis... [more]
PGL1B_ARATH9.349e-12082.61PGR5-like protein 1B, chloroplastic OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank description721 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 866 5, mRNA sequence.