GO242043

Overview
NameGO242043
Unique NameGO242043
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9880 contig Csv1_Contig9880:631..1365. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO242043 vs. ExPASy Swiss-Prot
Match: PSA1B_ARATH (Proteasome subunit alpha type-1-B OS=Arabidopsis thaliana GN=PAF2 PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.833e-43
Identity = 81/99 (81.82%), Postives = 94/99 (94.95%), Query Frame = 1
Query:    1 DEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFD 297
            DE GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLER+FE+F ES++EDLIKDA+MAIRETLQGETLKSS+CTV+V+G  EPFH LDQE++QK+ID+F+
Sbjct:  138 DESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERKFESFQESSKEDLIKDAIMAIRETLQGETLKSSLCTVSVLGVDEPFHFLDQESIQKVIDTFE 236          
BLAST of GO242043 vs. ExPASy Swiss-Prot
Match: PSA1A_ARATH (Proteasome subunit alpha type-1-A OS=Arabidopsis thaliana GN=PAF1 PE=1 SV=3)

HSP 1 Score: 176.022 bits (445), Expect = 1.833e-43
Identity = 80/99 (80.81%), Postives = 93/99 (93.94%), Query Frame = 1
Query:    1 DEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFD 297
            DE GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFE+F +S+REDLIKDA++A+RETLQGETLKSS+CTVA++G  EPFH LDQE +QK+ID+F+
Sbjct:  138 DESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFESFGDSSREDLIKDAILAVRETLQGETLKSSLCTVAILGVDEPFHFLDQEAIQKVIDTFE 236          
BLAST of GO242043 vs. ExPASy Swiss-Prot
Match: PSA1_ORYSJ (Proteasome subunit alpha type-1 OS=Oryza sativa subsp. japonica GN=PAF1 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.525e-34
Identity = 72/106 (67.92%), Postives = 85/106 (80.19%), Query Frame = 1
Query:    1 DEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV-----GAGEPFHILDQETVQKLIDSFDIA 303
            DE GAHLYYNCPSGNYFEYQAFAIGSRSQAAKT+LERRFE +++ T E LIKDAL AI+ETLQGE L SS CTVA+V     G  EPF ++D + +Q++IDS + A
Sbjct:  138 DESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEGYNDYTPEQLIKDALSAIKETLQGEKLTSSNCTVAIVGRKDDGTVEPFEMIDVKRIQEIIDSMEAA 243          
BLAST of GO242043 vs. ExPASy Swiss-Prot
Match: PSA1_DICDI (Proteasome subunit alpha type-1 OS=Dictyostelium discoideum GN=psmA1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.393e-21
Identity = 46/98 (46.94%), Postives = 69/98 (70.41%), Query Frame = 1
Query:    1 DEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQG--ETLKSSICTVAVVGAGEPFHILDQETVQKLID 288
            D+ GAH+Y  CPSGN+++Y++ +IGSRSQ+AKTYLE+ FE+F E T E LI   L A+RET+    +TL S   ++ +VG G+PF I+++   Q  ++
Sbjct:  138 DQLGAHIYQTCPSGNFYDYKSISIGSRSQSAKTYLEKHFESFEECTLEQLITHGLRALRETIPNTDDTLNSKNVSIGIVGEGQPFKIIEEADAQPYLN 235          
BLAST of GO242043 vs. ExPASy Swiss-Prot
Match: PSA1_TRYCR (Proteasome subunit alpha type-1 OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.574e-17
Identity = 44/99 (44.44%), Postives = 63/99 (63.64%), Query Frame = 1
Query:    1 DEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAI-RETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSF 294
            D  G HLY+  PSG+ F+++A A+G RSQAA+TYLE+ FE+F +   ++LI  AL A+   T  G  L     T+A+VG G PF +L +E  +K +D F
Sbjct:  139 DSTGPHLYHTVPSGDVFDFKATAMGLRSQAARTYLEKHFESFPDCGLDELIMHALKALAAATSGGAELNIKNTTIAIVGKGTPFMVLTEEAARKYLDGF 237          
BLAST of GO242043 vs. ExPASy Swiss-Prot
Match: PSA1_MOUSE (Proteasome subunit alpha type-1 OS=Mus musculus GN=Psma1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.480e-16
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:    1 DEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFD 297
            D+ G H++  CPS NYF+ +A +IG+RSQ+A+TYLER    F E   ++L+K  L A+RETL  E  L +   ++ +VG    F I D + V   +D  +
Sbjct:  138 DDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLDGLE 237          
BLAST of GO242043 vs. ExPASy Swiss-Prot
Match: PSA1_RAT (Proteasome subunit alpha type-1 OS=Rattus norvegicus GN=Psma1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.758e-15
Identity = 39/100 (39.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:    1 DEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFD 297
            D+ G H++  CPS NYF+ +A +IG+RSQ+A+TYLER    F +   ++L+K  L A+RETL  E  L +   ++ +VG    F I D + V   +D  +
Sbjct:  138 DDMGPHVFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMQCNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLDGLE 237          
BLAST of GO242043 vs. ExPASy Swiss-Prot
Match: PSA1_MACFA (Proteasome subunit alpha type-1 OS=Macaca fascicularis GN=PSMA1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.705e-15
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:    1 DEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFD 297
            D+ G H++  CPS NYF+ +A +IG+RSQ+A+TYLER    F E    +L+K  L A+RETL  E  L +   ++ +VG    F I D + V   ++  +
Sbjct:  138 DDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLE 237          
BLAST of GO242043 vs. ExPASy Swiss-Prot
Match: PSA1_HUMAN (Proteasome subunit alpha type-1 OS=Homo sapiens GN=PSMA1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.705e-15
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:    1 DEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFD 297
            D+ G H++  CPS NYF+ +A +IG+RSQ+A+TYLER    F E    +L+K  L A+RETL  E  L +   ++ +VG    F I D + V   ++  +
Sbjct:  138 DDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLE 237          
BLAST of GO242043 vs. ExPASy Swiss-Prot
Match: PSA1_BOVIN (Proteasome subunit alpha type-1 OS=Bos taurus GN=PSMA1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.705e-15
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:    1 DEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFD 297
            D+ G H++  CPS NYF+ +A +IG+RSQ+A+TYLER    F E    +L+K  L A+RETL  E  L +   ++ +VG    F I D + V   ++  +
Sbjct:  138 DDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLE 237          
The following BLAST results are available for this feature:
BLAST of GO242043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PSA1B_ARATH1.833e-4381.82Proteasome subunit alpha type-1-B OS=Arabidopsis t... [more]
PSA1A_ARATH1.833e-4380.81Proteasome subunit alpha type-1-A OS=Arabidopsis t... [more]
PSA1_ORYSJ4.525e-3467.92Proteasome subunit alpha type-1 OS=Oryza sativa su... [more]
PSA1_DICDI4.393e-2146.94Proteasome subunit alpha type-1 OS=Dictyostelium d... [more]
PSA1_TRYCR8.574e-1744.44Proteasome subunit alpha type-1 OS=Trypanosoma cru... [more]
PSA1_MOUSE9.480e-1640.00Proteasome subunit alpha type-1 OS=Mus musculus GN... [more]
PSA1_RAT2.758e-1539.00Proteasome subunit alpha type-1 OS=Rattus norvegic... [more]
PSA1_MACFA4.705e-1539.00Proteasome subunit alpha type-1 OS=Macaca fascicul... [more]
PSA1_HUMAN4.705e-1539.00Proteasome subunit alpha type-1 OS=Homo sapiens GN... [more]
PSA1_BOVIN4.705e-1539.00Proteasome subunit alpha type-1 OS=Bos taurus GN=P... [more]

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Properties
Property NameValue
Genbank description691 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 834 5, mRNA sequence.