GO242028

Overview
NameGO242028
Unique NameGO242028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3308 contig Csv1_Contig3308:1132..1725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO242028 vs. ExPASy Swiss-Prot
Match: P2C16_ARATH (Protein phosphatase 2C 16 OS=Arabidopsis thaliana GN=HAB1 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.700e-25
Identity = 52/74 (70.27%), Postives = 63/74 (85.14%), Query Frame = 2
Query:    2 MTNEEACELARKRILLWHKKNGVTLATGRGEGIDPAAQAAAEYLSNRALQKGSKDNISVVVVDLKAQRKFKSKT 223
            M N+E CE+AR+RIL+WHKKNG      RG+GIDPA QAAA+YLS  ALQKGSKDNIS++V+DLKAQRKFK++T
Sbjct:  438 MNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSMLALQKGSKDNISIIVIDLKAQRKFKTRT 511          
BLAST of GO242028 vs. ExPASy Swiss-Prot
Match: P2C77_ARATH (Protein phosphatase 2C 77 OS=Arabidopsis thaliana GN=ABI2 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.389e-23
Identity = 58/79 (73.42%), Postives = 62/79 (78.48%), Query Frame = 2
Query:    2 MTNEEACELARKRILLWHKKNGVT-----LATGRGEGIDPAAQAAAEYLSNRALQKGSKDNISVVVVDLKAQRKFKSKT 223
            MTNEE C+LARKRILLWHKKN +       A  RGEG DPAA +AAEYLS  ALQKGSKDNISVVVVDLK  RKFKSK+
Sbjct:  343 MTNEEVCDLARKRILLWHKKNAMAGEALLPAEKRGEGKDPAAMSAAEYLSKMALQKGSKDNISVVVVDLKGIRKFKSKS 421          
BLAST of GO242028 vs. ExPASy Swiss-Prot
Match: P2C53_ORYSJ (Probable protein phosphatase 2C 53 OS=Oryza sativa subsp. japonica GN=Os05g0592800 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.079e-23
Identity = 54/77 (70.13%), Postives = 61/77 (79.22%), Query Frame = 2
Query:    2 MTNEEACELARKRILLWHKKNGVTLATGR----GEGIDPAAQAAAEYLSNRALQKGSKDNISVVVVDLKAQRKFKSK 220
            M+NEE C+ ARKRILLWHKKN  T +T      G+  DPAAQAAA+YLS  ALQKGSKDNI+VVV+DLKA RKFKSK
Sbjct:  368 MSNEEVCDAARKRILLWHKKNAATASTSSAQISGDSSDPAAQAAADYLSKLALQKGSKDNITVVVIDLKAHRKFKSK 444          
BLAST of GO242028 vs. ExPASy Swiss-Prot
Match: P2C06_ORYSJ (Probable protein phosphatase 2C 6 OS=Oryza sativa subsp. japonica GN=Os01g0583100 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.023e-22
Identity = 54/76 (71.05%), Postives = 62/76 (81.58%), Query Frame = 2
Query:    2 MTNEEACELARKRILLWHKKNGVTLATG--RGEGIDPAAQAAAEYLSNRALQKGSKDNISVVVVDLKAQRKFKSKT 223
            M+NEE C++ARKRILLWHKKNG   A+    G+  DPAA+AAAE LS  ALQKGSKDNISV+VVDLKA RKFKSK+
Sbjct:  392 MSNEEVCDVARKRILLWHKKNGTNPASAPRSGDSSDPAAEAAAECLSKLALQKGSKDNISVIVVDLKAHRKFKSKS 467          
BLAST of GO242028 vs. ExPASy Swiss-Prot
Match: P2C07_ARATH (Protein phosphatase 2C 7 OS=Arabidopsis thaliana GN=HAB2 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.712e-21
Identity = 48/74 (64.86%), Postives = 59/74 (79.73%), Query Frame = 2
Query:    2 MTNEEACELARKRILLWHKKNGVTLATGRGEGIDPAAQAAAEYLSNRALQKGSKDNISVVVVDLKAQRKFKSKT 223
            M+N+EAC+ AR+RIL WHKKNG      RG G D A QAAAEYLS  A+Q GSKDNIS++V+DLKAQRKFK+++
Sbjct:  438 MSNQEACDFARRRILAWHKKNGALPLAERGVGEDQACQAAAEYLSKLAIQMGSKDNISIIVIDLKAQRKFKTRS 511          
BLAST of GO242028 vs. ExPASy Swiss-Prot
Match: P2C56_ARATH (Protein phosphatase 2C 56 OS=Arabidopsis thaliana GN=ABI1 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 4.982e-21
Identity = 54/79 (68.35%), Postives = 60/79 (75.95%), Query Frame = 2
Query:    2 MTNEEACELARKRILLWHKKNGVTLATG------RGEGIDPAAQAAAEYLSNRALQKGSKDNISVVVVDLKAQRKFKSK 220
            MT+EEACE+ARKRILLWHKKN V           R EG DPAA +AAEYLS  A+Q+GSKDNISVVVVDLK +RK KSK
Sbjct:  353 MTDEEACEMARKRILLWHKKNAVAGDASLLADERRKEGKDPAAMSAAEYLSKLAIQRGSKDNISVVVVDLKPRRKLKSK 431          
BLAST of GO242028 vs. ExPASy Swiss-Prot
Match: P2C50_ORYSJ (Probable protein phosphatase 2C 50 OS=Oryza sativa subsp. japonica GN=Os05g0537400 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.700e-17
Identity = 44/74 (59.46%), Postives = 59/74 (79.73%), Query Frame = 2
Query:    2 MTNEEACELARKRILLWHKKNGVTLA-TGRGEG-IDPAAQAAAEYLSNRALQKGSKDNISVVVVDLKAQRKFKS 217
            ++NEEAC++AR++ILLWHK NG     +  GEG  DPAAQAAA+YL   AL+KGS+DNI+V+VVDLK ++K K+
Sbjct:  312 VSNEEACKVARRQILLWHKNNGAASPLSDEGEGSTDPAAQAAADYLMRLALKKGSEDNITVIVVDLKPRKKLKN 385          
The following BLAST results are available for this feature:
BLAST of GO242028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
P2C16_ARATH9.700e-2570.27Protein phosphatase 2C 16 OS=Arabidopsis thaliana ... [more]
P2C77_ARATH2.389e-2373.42Protein phosphatase 2C 77 OS=Arabidopsis thaliana ... [more]
P2C53_ORYSJ9.079e-2370.13Probable protein phosphatase 2C 53 OS=Oryza sativa... [more]
P2C06_ORYSJ2.023e-2271.05Probable protein phosphatase 2C 6 OS=Oryza sativa ... [more]
P2C07_ARATH1.712e-2164.86Protein phosphatase 2C 7 OS=Arabidopsis thaliana G... [more]
P2C56_ARATH4.982e-2168.35Protein phosphatase 2C 56 OS=Arabidopsis thaliana ... [more]
P2C50_ORYSJ5.700e-1759.46Probable protein phosphatase 2C 50 OS=Oryza sativa... [more]
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Properties
Property NameValue
Genbank description676 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 819 5, mRNA sequence.