GO242016
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of GO242016 vs. ExPASy Swiss-Prot
Match: U520_HUMAN (U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2) HSP 1 Score: 282.337 bits (721), Expect = 3.108e-75 Identity = 139/271 (51.29%), Postives = 193/271 (71.22%), Query Frame = 2 Query: 2 EVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDGENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKR-CLFKKSRVKLDLLLCRSWKETYTLYFMCD 811 E++++A+EY +PIR E+ ++R+L NPKF DPHVK N LLQAH SR Q+ L+ D EE+L A RL+QA VDV+SSNGWLS AL AME++QMVTQ MW +DS L QLPHF + KRC + K +E+VFD++EMED+ER LLQ++D Q+ D+ARFCNR+PNI++S+EV D +++R+G + + V LER+ E GPV + +P+ +EEGWW+V+GD K+N L++IKR L +K++VKLD + + YTLYFM D Sbjct: 1847 EIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTD---KGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEE---VTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATGAHNYTLYFMSD 2111
BLAST of GO242016 vs. ExPASy Swiss-Prot
Match: U520_DROME (Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4) HSP 1 Score: 273.478 bits (698), Expect = 1.444e-72 Identity = 140/276 (50.72%), Postives = 195/276 (70.65%), Query Frame = 2 Query: 2 EVLASASEYAQLPIRPGEEEVVRRLIHH--QRFSFEN---PKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDGENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKR-CLFKKSRVKLDLLLCRSWKETYTLYFMCD 811 E+++SA+EY + +R EE+V+R L + + N PKF DPH+K N LLQAH SR Q+G L+ D E++L A RL+QA VDV+SSNGWLS A+ AME++QMVTQ MW +DS L QLPHF ++ KRC E K IETVFD++E+ED++R LLQ+SD+Q+ D+ARFCNR+PNI++++EV D + + +G + + V LER+ E GPV + +P+ +EEGWW+V+GD KTN LL+IKR L +K++VKLD + K YTLY+M D Sbjct: 1846 EIISSAAEYEDVVVRHHEEQVLRTLSQRLPNKLTGPNETAPKFNDPHIKTNLLLQAHLSRLQLGPELQGDTEQILSKAIRLIQACVDVLSSNGWLSPAVAAMELAQMVTQAMWSKDSYLKQLPHFSPEIVKRCTE---KKIETVFDIMELEDEDRTRLLQLSDLQMADVARFCNRYPNIELNYEVVDKDRINSGSTVNVVVQLEREDE---VTGPVIAPFFPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKVKLDFVAPSPGKHDYTLYYMSD 2115
BLAST of GO242016 vs. ExPASy Swiss-Prot
Match: U520_CAEEL (Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1) HSP 1 Score: 219.935 bits (559), Expect = 1.894e-56 Identity = 116/272 (42.65%), Postives = 180/272 (66.18%), Query Frame = 2 Query: 2 EVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDGENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYP-KAKEEGWWLVVGDTKTNQLLAIKRCLF-KKSRVKLDLLLCRSWKETYTLYFMCD 811 E+++++SE+ +P+R E+ ++R+L +N KFTDPHVK N L+ AH SR ++ L D E ++L A RL+QA VDV+SSNGWLS A+ AME+SQM+TQ M+ + L QLPH L +R + K + +VF+L+E+E+D+R ++LQM +L D+ARFCN +P+I+++ E+++ + V + +++ L V LERD + PV + +P K KEEGWWLV+GD+++N LL IKR + +KS V+LD R + L+F+ D Sbjct: 1846 EIISASSEFGNVPMRHKEDVILRQLAERLPGQLKNQKFTDPHVKVNLLIHAHLSRVKLTAELNKDTELIVLRACRLVQACVDVLSSNGWLSPAIHAMELSQMLTQAMYSNEPYLKQLPHCSAALLERAK---AKEVTSVFELLELENDDRSDILQMEGAELADVARFCNHYPSIEVATELEN-DVVTSNDNLMLAVSLERDNDIDGLAPPVVAPLFPQKRKEEGWWLVIGDSESNALLTIKRLVINEKSSVQLDFAAPRPGHHKFKLFFISD 2113
BLAST of GO242016 vs. ExPASy Swiss-Prot
Match: HELCL_DICDI (Activating signal cointegrator 1 complex subunit 3-like OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1) HSP 1 Score: 211.075 bits (536), Expect = 8.799e-54 Identity = 113/280 (40.36%), Postives = 174/280 (62.14%), Query Frame = 2 Query: 2 EVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDGENVRAGEDITLQVVLERDLEGRTEVGPVYSN---------RYPKAKEEGWWLVVGDTKTNQLLAIKRCLF-KKSRVKLDLLLCRSWKETYTLYFMCD 811 +++++A E+ LPIR E++++ +L H + P + + K N LLQ HFSR+ + +L DQ+ +L +A+RLLQA+VDVISSN WL A+ AME+SQM+TQ MW+ DS+ QLPH K +R + IE+VFDL+ ++D+ R +LL +S + D+ + ++P+ID+S++VQD +++ A +T+++V+ERDL G E P+ N YPK K GWW ++GD+K N LLAIKR F KK++VK + K +LY D Sbjct: 1927 DIISNAPEFNSLPIRHREDQILMKLASHLPQKIDKPNYQEISTKVNVLLQCHFSRESISADLYQDQKFILENATRLLQAIVDVISSNSWLQPAIAAMELSQMITQAMWDSDSVFKQLPHMNK---RRIDAITSQGIESVFDLMSLDDNSRIQLLDLSQQESNDLVQSFMKYPDIDISYQVQDEDDLHADSIMTVEMVIERDL-GDDEENPIEINDSINVVSAPYYPKEKICGWWALIGDSKNNHLLAIKRITFLKKTKVKFEFPTPAVGKHQLSLYLFSD 2202 HSP 2 Score: 73.9442 bits (180), Expect = 1.679e-12 Identity = 75/307 (24.43%), Postives = 123/307 (40.07%), Query Frame = 2 Query: 5 VLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVGG-NLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQ--MSDVQLLDIARFCNRFPNIDMSFEVQDGENVRAGEDITLQVVLERDLEGRTEVGP--VYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRCLFKKSR-------VKLDLLLCRSWKETYTLYFMCDHIWAVIRYALRDVKSREELRKNSPPC 889 V + +SE+ + +R GE+ + +L+ + +P K N LLQ + S ++ G L +D + SASR+ +A+ +++ GW LA + +++M+ MW S L Q H + E G IE DL E + +Q QL D+ + FP +D++ VQ +L L + P Y RY GWW++V D ++L + KK V + L + Y + + DH W Y+L L + PPC Sbjct: 1086 VFSLSSEFKNVVVREGEKFELEKLLERVPIPIKE-NIEEPSSKINVLLQTYISNLKLDGFALVVDMFYIAQSASRITRALFEIVLKKGWAQLAKKILNLAKMIDSKMWSSQSPLRQF-HKISPKVLNQLERRGIPIE---DLYEYNSQQLGNAIQNPSEGKQLFDL---IHNFPKLDLTAHVQP--------------ILHGLLRVELSITPDFQYDERYHN-NSIGWWIIVEDVDGERILYFEYFSLKKKMVNGEDQLVSFTVPLSQPLPPQYYVRVISDH-WIGAEYSLPISFQHLILPEKYPPC 1368
BLAST of GO242016 vs. ExPASy Swiss-Prot
Match: BRR2_SCHPO (Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe GN=brr2 PE=1 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 5.524e-48 Identity = 105/248 (42.34%), Postives = 150/248 (60.48%), Query Frame = 2 Query: 2 EVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDGENVRAGEDITLQVVLERDLEGRTEVG-PVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRCLFKKS 742 E++ SA+EY QLPIR E+ V+ R+ NP + DPH K+ LL AHFSR ++ L +DQ+ +L LL A VD +SS G L + ME+SQMVTQ +W+RDS L Q+P+F L +RC + + + VFD+++++D++R ELL M + L A F N++P+ID+ FE++D E+V A L V L R+LE EV V + +P K E WWLV+ D KT LLAIK+ +S Sbjct: 1883 EIVTSAAEYEQLPIRKYEDIVLERIHSRLPVRLSNPNYEDPHTKSFILLAAHFSRFELPPGLVIDQKFILTRVHNLLGACVDTLSSEGHLIACIRPMEMSQMVTQALWDRDSPLKQIPYFDDALIERCNK---EGVHDVFDIIDLDDEKRTELLHMDNAHLAKCAEFINKYPDIDIDFEIEDSEDVHANSPSVLIVQLTRELEEDEEVDTTVIAPYFPAQKTEHWWLVISDDKT--LLAIKKITLGRS 2125
BLAST of GO242016 vs. ExPASy Swiss-Prot
Match: BRR2_YEAST (Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae GN=BRR2 PE=1 SV=2) HSP 1 Score: 161.77 bits (408), Expect = 6.122e-39 Identity = 89/272 (32.72%), Postives = 163/272 (59.93%), Query Frame = 2 Query: 5 VLASASEYAQLPIRPGEEEVVRRLIHHQRFSF-ENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDGENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRCLFKK--SRVKLDLLLCRSWKETYTLYFMCD 811 VL++A E+ +P+R G+ ++ +L F E+ K LLQA+FSR ++ + + D +++L L+ +VD++S+NG+L+ A AM+++QM+ QG+W+ D+ L Q+PHF + ++C+E ++ETV+D++ +ED+ER E+L ++D QL +A F N +PN+++++ + + +++ +G + + L RD+E E V S +YP K E WWLV+G+ +L AIK+ K + +L+ S K T++ +CD Sbjct: 1882 VLSTAVEFESVPLRKGDRALLVKLSKRLPLRFPEHTSSGSVSFKVFLLLQAYFSRLELPVDFQNDLKDILEKVVPLINVVVDILSANGYLN-ATTAMDLAQMLIQGVWDVDNPLRQIPHFNNKILEKCKEI---NVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKITIQLTRDVE--PENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKETQQYELEFDTPTSGKHNLTIWCVCD 2147
BLAST of GO242016 vs. ExPASy Swiss-Prot
Match: HELC1_HUMAN (Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens GN=ASCC3 PE=1 SV=3) HSP 1 Score: 107.071 bits (266), Expect = 1.789e-22 Identity = 90/317 (28.39%), Postives = 139/317 (43.85%), Query Frame = 2 Query: 5 VLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVG-GNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHF----------MKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQL-----LDIARFCNRFPNIDMSFEVQ-------DGEN-------------------VRAGEDITLQVVLERDLEGRTEVGP---VYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRCLFKKSRVKLDLLLCR---SWKETYTLYFMCD 811 +L+ A EY LP+R E+ + L F PH KA+ LLQAH SR + + D + VL A R+ QAM+DV ++ GWL L + QMV QG W +DS LL LP+ K + K SIE++ +L+ + M + +L F + P I++ V+ +G N + A ++ LQV L+R G + P + R+PK+K+EGW+L++G+ +L+A+KR + ++ L + YTLYFM D Sbjct: 1848 ILSDAEEYTDLPVRHNEDHMNSELAKCLPIESNPHSFDSPHTKAHLLLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAANQGWLVTVLNITNLIQMVIQGRWLKDSSLLTLPNIENHHLHLFKKWKPIMKGPHARGRTSIESLPELIHACGGKDHVFSSMVESELHAAKTKQAWNFLSHLPVINVGISVKGSWDDLVEGHNELSVSTLTADKRDDNKWIKLHADQEYVLQVSLQRVHFGFHKGKPESCAVTPRFPKSKDEGWFLILGEVDKRELIALKRVGYIRNHHVASLSFYTPEIPGRYIYTLYFMSD 2164
BLAST of GO242016 vs. ExPASy Swiss-Prot
Match: HELC1_DICDI (Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium discoideum GN=ascc3 PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 2.187e-20 Identity = 73/278 (26.26%), Postives = 128/278 (46.04%), Query Frame = 2 Query: 5 VLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVG-GNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQEN----PGKSIETVFDLVEMEDDERRELLQ---MSDVQLLDIARFCNRFPNIDMSFEVQDGEN------------------------------VRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKR 724 VL+ A+EY++ P+R EE + + L + N + D H K + LLQAHF R + + D + L R+LQAM+DV G+ + A+ + + QM+ QG W+ DS L+ LPH KD A N G+ I + D++++ D+ L +SD Q+ + + P + + + + N V +G++ +++ + R+ + + G ++ Y K K+EGW +V+ D K Q++ KR Sbjct: 1846 VLSDAAEYSEFPVRHNEEILNQELNENLPIKIGN--YEDSHTKVHLLLQAHFQRCPLPITDFTTDTKSALDQGIRILQAMIDVSFEYGYFATAIQVIRLLQMLVQGRWDYDSSLMTLPHINKDFADFLSSNLILSNGEQISNLSDMLKIPRDKIHLSLTNIGLSDSQIKETLNVIDHLPKVKIEYFINTNNNSNNNDDNNNENNNNNNKKNNNNNNNNNKSIVYSGQEFNIKIKVTRENK-KFSNGHAFAPLYSKDKDEGWIMVLTDEK-EQMIGFKR 2119
BLAST of GO242016 vs. ExPASy Swiss-Prot
Match: SLH1_YEAST (Antiviral helicase SLH1 OS=Saccharomyces cerevisiae GN=SLH1 PE=1 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 1.051e-14 Identity = 73/261 (27.97%), Postives = 117/261 (44.83%), Query Frame = 2 Query: 8 LASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTD--------PHVKANALLQAHFSRQQVG-GNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKR--------CQENPGKSIETVFDLVEMEDDERRELLQMSD---VQLLDIARFCNRFPNIDMSFEVQDGENVRAGEDITLQVVLERDLEGRTEVG-PVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRC 727 L+ A EY +LP+R GE + + R+S E+ FTD PHVK LLQAH SR + + D VL + R+LQA +DV S G+ L +++ Q + QG W D + LP K + P + + + L E+ ++LL + D + + RF ++ V +G E+ + + L + G VY +++PK ++E W+L+ K ++LL IKRC Sbjct: 1663 LSLAVEYNELPVRGGEIIMNEEMSQQSRYSVEST-FTDEFELPMWDPHVKTFLLLQAHLSRVDLPIADYIQDTVSVLDQSLRILQAYIDVASELGYFHTVLTMIKMMQCIKQGYWYEDDPVSVLPGLQLRRIKDYTFSEQGFIEMTPQQKKKKLLTLEEIGRFGYKKLLNVFDQLTFGMTESEDTKKRFVSVCQRLPVLEGMKFEEQENNEVLTFYSKHLSSKHNNGFEVYCDKFPKIQKELWFLI--GHKGDELLMIKRC 1920
BLAST of GO242016 vs. ExPASy Swiss-Prot
Match: SEC63_PONAB (Translocation protein SEC63 homolog OS=Pongo abelii GN=SEC63 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 6.816e-14 Identity = 68/228 (29.82%), Postives = 107/228 (46.93%), Query Frame = 2 Query: 5 VLASASEY-----AQLPIRPGEEEVVRRLIHHQ---RFSFENPKFTDPH-VKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLS------------LALL--AMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQ-MSDVQLLDIARFCNRFPNIDMSFEVQ-----DGENVRAGEDITLQVVLER 601 VLA ASE+ RP + ++ +LI P T P+ +KA LL +H +R ++ L+ DQ+ +L LLQ MV+VI ++ LA L M++SQM QG+ + S LLQLPH +D +R + I+T+ DLV +++ +R LL + D + ++ FP + M + Q D N+ G +T+ V L R Sbjct: 249 VLAGASEFDPQYNKDATSRPTDNILIPQLIREIGSINLKKNEPPLTCPYSLKARVLLLSHLARMKIPETLEEDQQFMLKKCPALLQEMVNVICQLIVMARNREEREFRAPTLASLENCMKLSQMAVQGLQQFKSPLLQLPHIEEDNLRRVSNHKKYKIKTIQDLVSLKESDRHTLLHFLEDEKYEEVMAVLGSFPYVTMDIKSQVLDDEDSNNITVGSLVTVLVKLTR 476 The following BLAST results are available for this feature:
BLAST of GO242016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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