GO241999

Overview
NameGO241999
Unique NameGO241999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9274 contig Csv1_Contig9274:1286..1748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241999 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 1.512e-35
Identity = 69/88 (78.41%), Postives = 77/88 (87.50%), Query Frame = 1
Query:    1 QPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAAPGEANADAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 264
            QP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AA G+ANADAI  G FYGK AQQ+N+PVPEGCTDP AENFDPTARSDDG+C Y
Sbjct:  385 QPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVY 472          
BLAST of GO241999 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 3.723e-34
Identity = 65/90 (72.22%), Postives = 79/90 (87.78%), Query Frame = 1
Query:    1 QPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAAPGEANADAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 270
            QP MT++KL+EYGNM+VQEQENVKRVQLAD+Y+S AA G+AN DAI  G F+GKAAQQ+++PV +GCTDP A+N+DPTARSDDGSC Y L
Sbjct:  383 QPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472          
BLAST of GO241999 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 3.723e-34
Identity = 67/90 (74.44%), Postives = 83/90 (92.22%), Query Frame = 1
Query:    1 QPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAAPGEANADAIQSGNFYGKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQYT 267
            QP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAA G+AN+DA+++G+FYG+ AQQ  N+PVPEGCTDP A+NFDPTARSDDGSC YT
Sbjct:  376 QPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYGQGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSCLYT 465          
BLAST of GO241999 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 6.351e-34
Identity = 65/89 (73.03%), Postives = 80/89 (89.89%), Query Frame = 1
Query:    1 QPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAAPGEANADAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYT 267
            QP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AA G+AN DA+++G+FYGK AQQ  +PVPEGCTD  A+N+DPTARSDDGSC YT
Sbjct:  375 QPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYT 463          
BLAST of GO241999 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.198e-32
Identity = 69/90 (76.67%), Postives = 79/90 (87.78%), Query Frame = 1
Query:    1 QPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAAPGEANADAIQSGNFY-GKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQY 264
            QP+MT++KLL YG M+VQEQENVKRVQLADKY+SEAA G+AN DAI+ G FY G+AAQQ+ NVPVPEGCTDP A N+DPTARSDDGSC Y
Sbjct:  385 QPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVY 474          
BLAST of GO241999 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.286e-18
Identity = 43/53 (81.13%), Postives = 50/53 (94.34%), Query Frame = 1
Query:    1 QPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAAPGEANADAIQSGNFYG 159
            QP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAA G+AN+DA+ +G FYG
Sbjct:  385 QPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437          
BLAST of GO241999 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.381e-18
Identity = 42/54 (77.78%), Postives = 51/54 (94.44%), Query Frame = 1
Query:    1 QPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAAPGEANADAIQSGNFYGK 162
            QP+MT+EKL+EYG+M+VQEQENVKRVQLADKYLSEAA G+AN DA+++G FYGK
Sbjct:  372 QPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 425          
BLAST of GO241999 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 8.334e-18
Identity = 42/52 (80.77%), Postives = 49/52 (94.23%), Query Frame = 1
Query:    1 QPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAAPGEANADAIQSGNFY 156
            QP+MT+EKLLEYGNM+VQEQENVKRVQLADKYL EAA G+ANADAI +G+F+
Sbjct:  389 QPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440          
BLAST of GO241999 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.055e-17
Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = 1
Query:    1 QPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAAPGEANADAIQSGNF 153
            QP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAA G+ANADAI +GNF
Sbjct:  389 QPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439          
BLAST of GO241999 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.572e-16
Identity = 39/52 (75.00%), Postives = 49/52 (94.23%), Query Frame = 1
Query:    1 QPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAAPGEANADAIQSGNFY 156
            QP+M+++KLL+YGNM+VQEQENVKRVQLADKYL+EAA G AN DAI+SG+F+
Sbjct:  387 QPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438          
The following BLAST results are available for this feature:
BLAST of GO241999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RCA_ARATH1.512e-3578.41Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL3.723e-3472.22Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ3.723e-3474.44Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU6.351e-3473.03Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR1.198e-3276.67Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO1.286e-1881.13Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU6.381e-1877.78Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC8.334e-1880.77Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC7.055e-1780.39Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU1.572e-1675.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank description647 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 790 5, mRNA sequence.