GO241920

Overview
NameGO241920
Unique NameGO241920
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241920_ssr779 microsatellite GO241920_ssr779:779..788. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1577 contig Csv1_Contig1577:766..1606. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: LET12_SOLLC (Homeobox protein knotted-1-like LET12 OS=Solanum lycopersicum GN=LET12 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.554e-44
Identity = 82/86 (95.35%), Postives = 85/86 (98.84%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 266
            ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTS+LKAWW SH+KWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH+NP
Sbjct:  327 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 412          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNAT3_ARATH (Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana GN=KNAT3 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.554e-44
Identity = 82/86 (95.35%), Postives = 85/86 (98.84%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 266
            ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTS+LKAWW SH+KWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH+NP
Sbjct:  322 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 407          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNAP3_MALDO (Homeobox protein knotted-1-like 3 OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.554e-44
Identity = 82/86 (95.35%), Postives = 85/86 (98.84%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 266
            ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTS+LKAWW SH+KWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH+NP
Sbjct:  330 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 415          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNOSD_ORYSJ (Homeobox protein knotted-1-like 13 OS=Oryza sativa subsp. japonica GN=OSH45 PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.650e-44
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 266
            ELKHELKQGYKEK++DIREEILRKRRAGKLPGDTTS LKAWW SHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH+NP
Sbjct:  270 ELKHELKQGYKEKLIDIREEILRKRRAGKLPGDTTSTLKAWWQSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 355          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNAT4_ARATH (Homeobox protein knotted-1-like 4 OS=Arabidopsis thaliana GN=KNAT4 PE=1 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 3.461e-44
Identity = 81/86 (94.19%), Postives = 85/86 (98.84%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 266
            ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTS+LK+WW SH+KWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH+NP
Sbjct:  286 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 371          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNOS2_ORYSJ (Homeobox protein knotted-1-like 2 OS=Oryza sativa subsp. japonica GN=HOS58 PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 2.930e-43
Identity = 78/87 (89.66%), Postives = 85/87 (97.70%), Query Frame = 3
Query:    6 HELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 266
            HELK+ELKQGYKEK+VDIREEILRKRRAGKLPGDT S+LKAWW +H+KWPYPTE+DKARLVQETGLQLKQINNWFINQRKRNWH+NP
Sbjct:  204 HELKNELKQGYKEKLVDIREEILRKRRAGKLPGDTASILKAWWQAHSKWPYPTEDDKARLVQETGLQLKQINNWFINQRKRNWHSNP 290          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNOSB_ORYSJ (Homeobox protein knotted-1-like 11 OS=Oryza sativa subsp. japonica GN=HOS59 PE=2 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 8.525e-43
Identity = 78/86 (90.70%), Postives = 83/86 (96.51%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 266
            ELKHELKQGY+EK+VDIREEILRKRRAGKLPGDT S LKAWW +H+KWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH+NP
Sbjct:  214 ELKHELKQGYREKLVDIREEILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 299          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNOX2_MAIZE (Homeobox protein knotted-1-like 2 (Fragment) OS=Zea mays GN=KNOX2 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.742e-41
Identity = 76/85 (89.41%), Postives = 81/85 (95.29%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 263
            ELKHELKQGY++K+VDIREEILRKRRAGKLPGDT S LKAWW +H+KWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH N
Sbjct:    4 ELKHELKQGYRDKLVDIREEILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHNN 88          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNOX7_MAIZE (Homeobox protein knotted-1-like 7 (Fragment) OS=Zea mays GN=KNOX7 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.582e-41
Identity = 75/85 (88.24%), Postives = 83/85 (97.65%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 263
            ELK+ELKQGYKEK+VDIREEI+RKRRAGKLPGDT S+LKAWW +H+KWPYPTE+DKARLVQETGLQLKQINNWFINQRKRNWH+N
Sbjct:    1 ELKNELKQGYKEKLVDIREEIMRKRRAGKLPGDTASVLKAWWQAHSKWPYPTEDDKARLVQETGLQLKQINNWFINQRKRNWHSN 85          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNOX6_MAIZE (Homeobox protein knotted-1-like 6 (Fragment) OS=Zea mays GN=KNOX6 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.582e-41
Identity = 75/85 (88.24%), Postives = 83/85 (97.65%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 263
            ELK+ELKQGYKEK+VDIREEI+RKRRAGKLPGDT S+LKAWW +H+KWPYPTE+DKARLVQETGLQLKQINNWFINQRKRNWH+N
Sbjct:    1 ELKNELKQGYKEKLVDIREEIMRKRRAGKLPGDTASVLKAWWQAHSKWPYPTEDDKARLVQETGLQLKQINNWFINQRKRNWHSN 85          
The following BLAST results are available for this feature:
BLAST of GO241920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
LET12_SOLLC1.554e-4495.35Homeobox protein knotted-1-like LET12 OS=Solanum l... [more]
KNAT3_ARATH1.554e-4495.35Homeobox protein knotted-1-like 3 OS=Arabidopsis t... [more]
KNAP3_MALDO1.554e-4495.35Homeobox protein knotted-1-like 3 OS=Malus domesti... [more]
KNOSD_ORYSJ2.650e-4494.19Homeobox protein knotted-1-like 13 OS=Oryza sativa... [more]
KNAT4_ARATH3.461e-4494.19Homeobox protein knotted-1-like 4 OS=Arabidopsis t... [more]
KNOS2_ORYSJ2.930e-4389.66Homeobox protein knotted-1-like 2 OS=Oryza sativa ... [more]
KNOSB_ORYSJ8.525e-4390.70Homeobox protein knotted-1-like 11 OS=Oryza sativa... [more]
KNOX2_MAIZE2.742e-4189.41Homeobox protein knotted-1-like 2 (Fragment) OS=Ze... [more]
KNOX7_MAIZE3.582e-4188.24Homeobox protein knotted-1-like 7 (Fragment) OS=Ze... [more]
KNOX6_MAIZE3.582e-4188.24Homeobox protein knotted-1-like 6 (Fragment) OS=Ze... [more]

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Properties
Property NameValue
Genbank description568 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 710 5, mRNA sequence.