GO241915

Overview
NameGO241915
Unique NameGO241915
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7080 contig Csv1_Contig7080:1417..1866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241915 vs. ExPASy Swiss-Prot
Match: CCD1_PEA (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.535e-34
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 2
Query:    2 GPGRFGSEAVFVPREPGTSSEEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQAK 247
            GPGRFGSEAV+VPR PGT SEEDDGYLIFF HDE TGKS V+VIDAK MSA+PVAVVELP RVPYGFHAFFV+E+QL+EQAK
Sbjct:  459 GPGRFGSEAVYVPRVPGTDSEEDDGYLIFFVHDENTGKSFVHVIDAKRMSAEPVAVVELPQRVPYGFHAFFVTEDQLQEQAK 540          
BLAST of GO241915 vs. ExPASy Swiss-Prot
Match: CCD1_PHAVU (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 4.467e-34
Identity = 67/83 (80.72%), Postives = 75/83 (90.36%), Query Frame = 2
Query:    2 GPGRFGSEAVFVPREPGTSSEEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQAKL 250
            GPG+FGSEAV++PR PG  SEEDDGYL+ F HDE  GKS V+VIDAKTMSADPVAVVELP+RVPYGFHAFFV+EEQL+EQAKL
Sbjct:  461 GPGKFGSEAVYIPRVPGIESEEDDGYLVLFVHDENAGKSFVHVIDAKTMSADPVAVVELPNRVPYGFHAFFVTEEQLQEQAKL 543          
BLAST of GO241915 vs. ExPASy Swiss-Prot
Match: CCD_CROSA (Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.300e-33
Identity = 68/80 (85.00%), Postives = 73/80 (91.25%), Query Frame = 2
Query:    2 GPGRFGSEAVFVPREPGTSSEEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQ 241
            GPGR+GSEAVFVPRE G  SEEDDGYLIFF HDE TGKS VNVIDAKTMSA+PVAVVELP+RVPYGFHAFFV+EEQL+ Q
Sbjct:  463 GPGRYGSEAVFVPRERGIKSEEDDGYLIFFVHDENTGKSEVNVIDAKTMSAEPVAVVELPNRVPYGFHAFFVNEEQLQWQ 542          
BLAST of GO241915 vs. ExPASy Swiss-Prot
Match: CCD1_ARATH (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 2.996e-30
Identity = 63/80 (78.75%), Postives = 71/80 (88.75%), Query Frame = 2
Query:    2 GPGRFGSEAVFVPREPGTSSEEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQ 241
            G GR+GSEA++VPRE   ++EEDDGYLIFF HDE TGKS V VIDAKTMSA+PVAVVELPHRVPYGFHA FV+EEQL+EQ
Sbjct:  459 GEGRYGSEAIYVPRE---TAEEDDGYLIFFVHDENTGKSCVTVIDAKTMSAEPVAVVELPHRVPYGFHALFVTEEQLQEQ 535          
BLAST of GO241915 vs. ExPASy Swiss-Prot
Match: CCD4_ARATH (Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.886e-16
Identity = 41/80 (51.25%), Postives = 52/80 (65.00%), Query Frame = 2
Query:    2 GPGRFGSEAVFVPREPGT-SSEEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEE 238
            G G +G E  FV R+PG   +EEDDGY++ + HDE TG+S   V+DAK+   + VA V LP RVPYGFH  FV E  L +
Sbjct:  515 GSGCYGGEPFFVARDPGNPEAEEDDGYVVTYVHDEVTGESKFLVMDAKSPELEIVAAVRLPRRVPYGFHGLFVKESDLNK 594          
BLAST of GO241915 vs. ExPASy Swiss-Prot
Match: NCED1_MAIZE (9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.035e-14
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 2
Query:    2 GPGRFGSEAVFVPREPGTSSE--EDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQA 244
            G GRFG E  FVP +P  +    EDDGY++ F HDE+ G S + V++A  M  +  A V+LP RVP+GFH  F++ ++LE QA
Sbjct:  523 GEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVHDERAGTSELLVVNAADMRLE--ATVQLPSRVPFGFHGTFITGQELEAQA 603          
BLAST of GO241915 vs. ExPASy Swiss-Prot
Match: NCED6_ARATH (9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.305e-14
Identity = 43/80 (53.75%), Postives = 49/80 (61.25%), Query Frame = 2
Query:    2 GPGRFGSEAVFVPREPGTSSEEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQ 241
            GP RFG E  FVP   G   EED GY++ F  DE+  +S   V+DA  M    VA V LP RVPYGFH  FVSE QL+EQ
Sbjct:  501 GPSRFGGEPCFVPEGEG---EEDKGYVMGFVRDEEKDESEFVVVDATDMKQ--VAAVRLPERVPYGFHGTFVSENQLKEQ 575          
BLAST of GO241915 vs. ExPASy Swiss-Prot
Match: ZCD_CROSA (Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplast OS=Crocus sativus GN=ZCD PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.135e-14
Identity = 40/81 (49.38%), Postives = 51/81 (62.96%), Query Frame = 2
Query:    2 GPGRFGSEAVFVPREPGTSS-EEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQ 241
            G G FG E  FVP     S  EEDDGY++ + HDE  G+SS  V+DA++   + +A V LP RVPYGFH  FV+E +L  Q
Sbjct:  288 GVGCFGGEPFFVPASSKKSGGEEDDGYVVSYLHDEGKGESSFVVMDARSPELEILAEVVLPRRVPYGFHGLFVTEAELLSQ 368          
BLAST of GO241915 vs. ExPASy Swiss-Prot
Match: NCED3_ARATH (9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.759e-14
Identity = 36/80 (45.00%), Postives = 53/80 (66.25%), Query Frame = 2
Query:    2 GPGRFGSEAVFVPREPGTSSEEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQ 241
            G  R+G E +F+P E G   EED+GY++ F HDEKT KS + +++A ++  +  A V+LP RVPYGFH  F+  + L +Q
Sbjct:  523 GDNRYGGEPLFLPGEGG---EEDEGYILCFVHDEKTWKSELQIVNAVSLEVE--ATVKLPSRVPYGFHGTFIGADDLAKQ 597          
BLAST of GO241915 vs. ExPASy Swiss-Prot
Match: NCED9_ARATH (9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.548e-13
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 2
Query:    2 GPGRFGSEAVFVPREPGTSSEEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQA 244
            G G++G E +F+P   G   EED GY++ F HDE+  KS + +I+A  M  +  A V LP RVPYGFH  F+S+E L +QA
Sbjct:  580 GEGKYGGEPLFLPSGDG---EEDGGYIMVFVHDEEKVKSELQLINAVNMKLE--ATVTLPSRVPYGFHGTFISKEDLSKQA 655          
The following BLAST results are available for this feature:
BLAST of GO241915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CCD1_PEA1.535e-3484.15Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD1_PHAVU4.467e-3480.72Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD_CROSA1.300e-3385.00Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Cr... [more]
CCD1_ARATH2.996e-3078.75Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD4_ARATH1.886e-1651.25Probable carotenoid cleavage dioxygenase 4, chloro... [more]
NCED1_MAIZE1.035e-1446.999-cis-epoxycarotenoid dioxygenase 1, chloroplastic... [more]
NCED6_ARATH2.305e-1453.759-cis-epoxycarotenoid dioxygenase NCED6, chloropla... [more]
ZCD_CROSA5.135e-1449.38Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromo... [more]
NCED3_ARATH8.759e-1445.009-cis-epoxycarotenoid dioxygenase NCED3, chloropla... [more]
NCED9_ARATH2.548e-1346.919-cis-epoxycarotenoid dioxygenase NCED9, chloropla... [more]

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Properties
Property NameValue
Genbank description563 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 705 5, mRNA sequence.