GO241902

Overview
NameGO241902
Unique NameGO241902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SR54C_ARATH (Signal recognition particle 54 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=FFC PE=1 SV=1)

HSP 1 Score: 457.603 bits (1176), Expect = 1.588e-134
Identity = 230/267 (86.14%), Postives = 254/267 (95.13%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMGVMESGSLPALSNLEDALKSDRR 801
            I+DTAGRLQIDK MMDELKDVK+ LNPTEVLLVVDAMTGQEAA LVTTFN+EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKA EVM+QEDAE++QKKIMSA FDFNDFLKQTR VA+MGSM+RV+GMIPGMGK++PAQ+REAEK+L +MEAMIE MTPEERE+PELLAESP RRKR+A+DSGKTEQ VS LVAQ+FQMRV+MKNLMGVME GS+PALS LEDALK++++
Sbjct:  263 IMDTAGRLQIDKGMMDELKDVKKFLNPTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKATEVMRQEDAEDLQKKIMSAKFDFNDFLKQTRAVAKMGSMTRVLGMIPGMGKVSPAQIREAEKNLLVMEAMIEVMTPEERERPELLAESPERRKRIAKDSGKTEQQVSALVAQIFQMRVKMKNLMGVMEGGSIPALSGLEDALKAEQK 529          

HSP 2 Score: 44.669 bits (104), Expect = 1.588e-134
Identity = 18/27 (66.67%), Postives = 27/27 (100.00%), Query Frame = 3
Query:  795 QKAPPGTARRKKRSESRRQFVDSASTR 875
            QKAPPGTARRK++++SR++FV+SAS++
Sbjct:  528 QKAPPGTARRKRKADSRKKFVESASSK 554          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_SYNY3 (Signal recognition particle protein OS=Synechocystis sp. (strain PCC 6803) GN=ffh PE=3 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 1.141e-77
Identity = 146/251 (58.17%), Postives = 191/251 (76.10%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNL-MGVMESG 750
            ++DTAGRLQID  MM EL ++K+V+ P + LLVVDAMTGQEAA L  TF+ +IGITGAILTKLDGD+RGGAALSV+++SG+PIK VG GE++E L+PFYPDR+A RIL MGDVL+ VEKAQE +   D E++Q KI+ A FDF+DF+KQ R +  MGS+  ++ MIPGM K++   + + EK LK  EAMI +MT EER+ P+LLA+SP RR+R+AQ SG +E  VS+L+    +MR  M+ + MG M  G
Sbjct:  187 LIDTAGRLQIDPQMMAELAEIKQVVKPDDTLLVVDAMTGQEAANLTHTFHEQIGITGAILTKLDGDTRGGAALSVRQISGQPIKFVGVGEKVEALQPFYPDRLASRILNMGDVLTLVEKAQEAIDVGDVEKLQNKILEATFDFDDFIKQMRFMKNMGSLGGLLKMIPGMNKLSSGDIEKGEKELKRTEAMISSMTTEERKNPDLLAKSPSRRRRIAQGSGHSETDVSKLITNFTKMRTMMQQMGMGGMPGG 437          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_SYNE7 (Signal sequence-binding protein OS=Synechococcus elongatus (strain PCC 7942) GN=ffh PE=3 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 5.664e-77
Identity = 149/259 (57.53%), Postives = 191/259 (73.75%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGM-GKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMGVMESGSLPALSNL 774
            IVDTAGRLQID  MM+EL  VK  + P EVLLVVD+M GQEAA+L  +F+  IGITGAILTKLDGDSRGGAALS++ VSG+PIK VG GE++E L+PF+P+RMA RILGMGDVL+ VEKAQE +   D E+MQ+KI++A FDF DFLKQ R +  MGS++  I +IPG+ GKI   Q+R+ E+ LK +EAMI +MTP+ER  P+LL+ SP RR R+A+  G+TE  + Q++ Q  QMR  M+     M  G  P +  +
Sbjct:  187 IVDTAGRLQIDTEMMEELAQVKEAIAPHEVLLVVDSMIGQEAASLTRSFHERIGITGAILTKLDGDSRGGAALSIRRVSGQPIKFVGLGEKVEALQPFHPERMASRILGMGDVLTLVEKAQEEIDLADVEKMQEKILAAKFDFTDFLKQMRLLKNMGSLAGFIKLIPGLGGKINDEQLRQGERQLKRVEAMINSMTPQERRDPDLLSNSPSRRHRIAKGCGQTEAEIRQIIQQFQQMRTMMQQ----MSQGGFPGMGGM 441          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_STRMU (Signal recognition particle protein OS=Streptococcus mutans GN=ffh PE=3 SV=3)

HSP 1 Score: 239.58 bits (610), Expect = 2.310e-62
Identity = 118/245 (48.16%), Postives = 173/245 (70.61%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP-AQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLM 732
            ++DTAGRLQID+ +M EL+D+K + NP E+LLVVD+M GQEAA +   FN ++ +TG ILTK+DGD+RGGAALSV++++GKPIK  G GE++ D+E F+PDRM+ RILGMGD+L+ +EKA +   ++ + E+ +K+   +FDFNDF++Q   V  MGSM  ++ MIPGM      A V+  E  +    A++ +MTPEERE P+LL  +P RR+R+A  SG T  +V++ +    Q +  M+ +M
Sbjct:  189 LIDTAGRLQIDEKLMTELRDIKALANPNEILLVVDSMIGQEAANVAREFNQQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSRILGMGDLLTLIEKASQDYDEQKSAELAEKMRENSFDFNDFIEQLDQVQNMGSMEDILKMIPGMANNPALANVKVDEGEIARKRAIVSSMTPEERENPDLL--TPSRRRRIASGSGNTFVNVNKFIKDFNQAKKMMQGVM 431          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_BACSU (Signal recognition particle protein OS=Bacillus subtilis GN=ffh PE=1 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 4.357e-61
Identity = 116/244 (47.54%), Postives = 178/244 (72.95%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNL 729
            I+DTAGRL ID  +MDEL +VK + NP E+ LVVD+MTGQ+A  +  +FN ++G+TG +LTKLDGD+RGGAALS++ V+  PIK  G GE+++ LEPF+P+RMA RILGMGDVL+ +EKAQ  + ++ A+E+++K+ + +F  +DFL+Q   V  MG +  ++ M+PG GK+   + ++  EK L  +EA+I++MT  E+E+P+++  S  RRKR+A+ SG + Q V++L+ Q  +M+  MK +
Sbjct:  189 ILDTAGRLHIDHELMDELTNVKEIANPEEIFLVVDSMTGQDAVNVAKSFNEQLGLTGVVLTKLDGDTRGGAALSIRAVTNTPIKFAGLGEKLDALEPFHPERMASRILGMGDVLTLIEKAQASVDEDKAKELEQKMRTMSFTLDDFLEQLGQVRNMGPLDELLQMMPGAGKMKGLKNIQVDEKQLNHVEAIIKSMTVLEKEQPDIINAS--RRKRIAKGSGTSVQEVNRLLKQFDEMKKMMKQM 430          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_AQUAE (Signal recognition particle protein OS=Aquifex aeolicus GN=ffh PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 4.357e-61
Identity = 117/258 (45.35%), Postives = 178/258 (68.99%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMGVMESGSLPALSNL 774
            ++DTAGRL +D+ +M EL+++K V NP+E+L V DAM GQ A     TF+  +G+TG ++TK+DGD+RGG ALSVKEV G PIK +G GE++ED+EPFYPDR+A RILG+GD+ S VEKAQEV+ ++ A+ M  K+M+  FD  D  +  R + +MG + +++ MIPG+       ++  EK  K +EA+I +MTPEER  P+++  S  R+KR+A+ SG T   V++L+ +  +M+  M+ L    ++G +PA+  +
Sbjct:  182 LLDTAGRLHVDEELMKELQEIKEVTNPSEILYVADAMQGQTALETAKTFHERLGLTGVVITKMDGDARGGLALSVKEVLGVPIKFIGVGEKIEDIEPFYPDRIAQRILGLGDIQSLVEKAQEVITEDKAQVMATKVMTGEFDLEDLREMLRMIQQMGPLDKLLSMIPGVAP-QLKHLKVDEKQFKKIEAIINSMTPEERRNPKIINMS--RKKRIARGSGTTVSDVNKLLKRYEEMKKMMRKL---QKAGGMPAIPKM 433          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_ECOLI (Signal recognition particle protein OS=Escherichia coli (strain K12) GN=ffh PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.401e-59
Identity = 121/246 (49.19%), Postives = 170/246 (69.11%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNL 729
            +VDTAGRL +D+AMMDE+K V   +NP E L VVDAMTGQ+AA     FN  + +TG +LTK+DGD+RGGAALS++ ++GKPIK +G GE+ E LEPF+PDR+A RILGMGDVLS +E  +  + +  AE++  K+   + FD NDFL+Q R +  MG M+ ++G +PGMG+I P  V+    +K L  MEA+I +MT +ER KPE++  S  R++R+A   G   Q V++L+ Q   M+  MK +
Sbjct:  188 LVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGS--RKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKM 430          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_ECOL6 (Signal recognition particle protein OS=Escherichia coli O6 GN=ffh PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.401e-59
Identity = 121/246 (49.19%), Postives = 170/246 (69.11%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNL 729
            +VDTAGRL +D+AMMDE+K V   +NP E L VVDAMTGQ+AA     FN  + +TG +LTK+DGD+RGGAALS++ ++GKPIK +G GE+ E LEPF+PDR+A RILGMGDVLS +E  +  + +  AE++  K+   + FD NDFL+Q R +  MG M+ ++G +PGMG+I P  V+    +K L  MEA+I +MT +ER KPE++  S  R++R+A   G   Q V++L+ Q   M+  MK +
Sbjct:  188 LVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGS--RKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKM 430          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_ECO57 (Signal recognition particle protein OS=Escherichia coli O157:H7 GN=ffh PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.401e-59
Identity = 121/246 (49.19%), Postives = 170/246 (69.11%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNL 729
            +VDTAGRL +D+AMMDE+K V   +NP E L VVDAMTGQ+AA     FN  + +TG +LTK+DGD+RGGAALS++ ++GKPIK +G GE+ E LEPF+PDR+A RILGMGDVLS +E  +  + +  AE++  K+   + FD NDFL+Q R +  MG M+ ++G +PGMG+I P  V+    +K L  MEA+I +MT +ER KPE++  S  R++R+A   G   Q V++L+ Q   M+  MK +
Sbjct:  188 LVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGS--RKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKM 430          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_THEAQ (Signal recognition particle protein OS=Thermus aquaticus GN=ffh PE=1 SV=3)

HSP 1 Score: 223.787 bits (569), Expect = 1.312e-57
Identity = 117/243 (48.15%), Postives = 168/243 (69.14%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNL 729
            +VDTAGRLQID+ +M EL  +K VL P EVLLV+DAMTGQEA ++   F+ ++G+TG +LTKLDGD+RGGAALS + V+GKPI   G  E+ E LEPFYP+R+AGRILGMGDV S  EK +    + +A +  K++        DFLKQ + + R+G  S ++G++PG+    P  ++  EK++K +EA++ +MTPEER+ P +L  S  RRKR+A+ SG + Q V++ +    +M+  MK+L
Sbjct:  185 LVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVASLAEKVRAAGLEAEAPKSAKEL-----SLEDFLKQMQNLKRLGPFSEILGLLPGV----PQGLKVDEKAIKRLEAIVLSMTPEERKDPRILNGS--RRKRIAKGSGTSVQEVNRFIKAFEEMKALMKSL 416          
The following BLAST results are available for this feature:
BLAST of GO241902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
SR54C_ARATH1.588e-13486.14Signal recognition particle 54 kDa protein, chloro... [more]
SRP54_SYNY31.141e-7758.17Signal recognition particle protein OS=Synechocyst... [more]
SRP54_SYNE75.664e-7757.53Signal sequence-binding protein OS=Synechococcus e... [more]
SRP54_STRMU2.310e-6248.16Signal recognition particle protein OS=Streptococc... [more]
SRP54_BACSU4.357e-6147.54Signal recognition particle protein OS=Bacillus su... [more]
SRP54_AQUAE4.357e-6145.35Signal recognition particle protein OS=Aquifex aeo... [more]
SRP54_ECOLI1.401e-5949.19Signal recognition particle protein OS=Escherichia... [more]
SRP54_ECOL61.401e-5949.19Signal recognition particle protein OS=Escherichia... [more]
SRP54_ECO571.401e-5949.19Signal recognition particle protein OS=Escherichia... [more]
SRP54_THEAQ1.312e-5748.15Signal recognition particle protein OS=Thermus aqu... [more]

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Properties
Property NameValue
Genbank description550 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 690 5, mRNA sequence.