GO241893

Overview
NameGO241893
Unique NameGO241893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241893 vs. ExPASy Swiss-Prot
Match: TPIC_ARATH (Triosephosphate isomerase, chloroplastic OS=Arabidopsis thaliana GN=TIM PE=1 SV=1)

HSP 1 Score: 399.053 bits (1024), Expect = 2.338e-110
Identity = 191/220 (86.82%), Postives = 210/220 (95.45%), Query Frame = 1
Query:    1 DVDVVVAPPFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVTTKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA 660
            DVDVVV+PPFVYIDQVK+SLTDRI+I+ QNSWVGKGGAFTGEISVEQLKD+GCKWV+LGHSERRHVIGE D+FIGKKAAYALSEGLGVIACIGE+L+EREAGKTFDVCF QLKA+ADA+PSWDN+V+AYEPVWAIGTGKVA+P+QAQEVH A+R WLK NVS +V +KTRIIYGGSVNG N AELAK+EDIDGFLVGGASLKGPEFATIVNSVTSKKVAA
Sbjct:   96 DVDVVVSPPFVYIDQVKSSLTDRIDISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA 315          
BLAST of GO241893 vs. ExPASy Swiss-Prot
Match: TPIC_SPIOL (Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1)

HSP 1 Score: 397.512 bits (1020), Expect = 6.803e-110
Identity = 188/220 (85.45%), Postives = 211/220 (95.91%), Query Frame = 1
Query:    1 DVDVVVAPPFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVTTKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA 660
            DVDVVVAPPFVYIDQVK+SLT R+EI+AQN W+GKGGAFTGEISVEQLKD+GC+WV+LGHSERRHVIGE ++FIGKKAAYAL++G+GVIACIGE L+EREAGKTFDVC+QQLKA+ADA+PSWDNVV+AYEPVWAIGTGKVA+P+QAQEVH A+RDWLK NVS +V +KTRIIYGGSVNG NCAELAKQEDIDGFLVGGASLKGPEFATIVNSVT+KKVAA
Sbjct:  103 DVDVVVAPPFVYIDQVKSSLTGRVEISAQNCWIGKGGAFTGEISVEQLKDLGCQWVILGHSERRHVIGEQNEFIGKKAAYALNQGVGVIACIGELLEEREAGKTFDVCYQQLKAFADALPSWDNVVVAYEPVWAIGTGKVASPDQAQEVHVAVRDWLKKNVSEEVASKTRIIYGGSVNGGNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTAKKVAA 322          
BLAST of GO241893 vs. ExPASy Swiss-Prot
Match: TPIC_FRAAN (Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa GN=TPI PE=2 SV=1)

HSP 1 Score: 396.356 bits (1017), Expect = 1.516e-109
Identity = 189/220 (85.91%), Postives = 212/220 (96.36%), Query Frame = 1
Query:    1 DVDVVVAPPFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVTTKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA 660
            DVDVVVAPPF+Y+DQVK+SLTDRIEI+ QNSWV KGGAFTGEISVEQLKDIG KWV+LGHSERRHVIGEDDQFIGKKAAYAL+EGLGVIACIGE+L+EREAGKTFDVC++QLKA+ADA+PSW+N+V+AYEPVWAIGTGKVA+P+QAQEVH A+R+WLK NVSA+V +KTRIIYGGSVNG N AELAK+EDIDGFLVGGASLKGPEFATIVN+VTSKKVAA
Sbjct:   95 DVDVVVAPPFLYLDQVKSSLTDRIEISGQNSWVAKGGAFTGEISVEQLKDIGRKWVILGHSERRHVIGEDDQFIGKKAAYALNEGLGVIACIGEKLEEREAGKTFDVCYEQLKAFADAVPSWENIVVAYEPVWAIGTGKVASPQQAQEVHVAVREWLKKNVSAEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNAVTSKKVAA 314          
BLAST of GO241893 vs. ExPASy Swiss-Prot
Match: TPIC_SECCE (Triosephosphate isomerase, chloroplastic OS=Secale cereale PE=1 SV=1)

HSP 1 Score: 382.489 bits (981), Expect = 2.265e-105
Identity = 183/220 (83.18%), Postives = 204/220 (92.73%), Query Frame = 1
Query:    1 DVDVVVAPPFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVTTKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA 660
            DVDVVVAPPF+YIDQVK+SLTDRIE++AQN+W+GKGGAFTGEIS EQL DIGC+WV+LGHSERRHVIGEDD+FIGKKAAYALS+ L V+ACIGE L+EREAGKTFDVCF+Q+KA+AD I  W NVVIAYEPVWAIGTGKVA+PEQAQEVHAA+RDWLK NVSADV +  RIIYGGSVN +NCAELAK+EDIDGFLVGGASLKGP+FATI NSVTSKKV A
Sbjct:   79 DVDVVVAPPFIYIDQVKSSLTDRIEVSAQNTWIGKGGAFTGEISAEQLVDIGCQWVILGHSERRHVIGEDDEFIGKKAAYALSQNLKVMACIGELLEEREAGKTFDVCFKQMKAFADNITDWTNVVIAYEPVWAIGTGKVASPEQAQEVHAAVRDWLKTNVSADVASTVRIIYGGSVNAANCAELAKKEDIDGFLVGGASLKGPDFATICNSVTSKKVTA 298          
BLAST of GO241893 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 1.631e-87
Identity = 156/220 (70.91%), Postives = 184/220 (83.64%), Query Frame = 1
Query:    4 VDVVVAPPFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD-AIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVTTKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA 660
            V VVV+PP+V++      L   I++AAQN WV KGGAFTGE+S + L ++G  WV+LGHSERR ++GE ++F+GKKAAYA SEGLGVIACIGE L+EREAGKTFDVCF+QLK++A      WDNVV+AYEPVWAIGTGKVA+PEQAQEVH A+RDWLK NVS +V +KTRIIYGGSVNG N   LA QED+DGFLVGGASLKGPEFATI+NSVT+KKVAA
Sbjct:   38 VTVVVSPPYVFLPDENAELKHEIQVAAQNCWVKKGGAFTGEVSAQMLANLGITWVILGHSERRTLLGESNEFVGKKAAYAQSEGLGVIACIGELLEEREAGKTFDVCFKQLKSFARFPAKPWDNVVVAYEPVWAIGTGKVASPEQAQEVHVAVRDWLKTNVSEEVASKTRIIYGGSVNGGNSLALAAQEDVDGFLVGGASLKGPEFATIINSVTAKKVAA 257          
BLAST of GO241893 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 287.345 bits (734), Expect = 9.915e-77
Identity = 138/215 (64.19%), Postives = 166/215 (77.21%), Query Frame = 1
Query:    4 VDVVVAPPFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVTTKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSK 648
            V+VVV+PP+V++  VK+ L     +AAQN WV KGGAFTGE+S E L ++G  WV+LGHSERR ++GE ++F+G K AYALS+GL VIAC+GE L++REAG T DV   Q KA A+ I  W NVV+AYEPVWAIGTGKVATP QAQEVHA+LRDWLK N S +V   TRIIYGGSV  +NC ELA Q D+DGFLVGGASLK PEF  I+N+ T K
Sbjct:   38 VEVVVSPPYVFLPVVKSQLRQEFHVAAQNCWVKKGGAFTGEVSAEMLVNLGVPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAEKIKDWSNVVVAYEPVWAIGTGKVATPAQAQEVHASLRDWLKTNASPEVAESTRIIYGGSVTAANCKELAAQPDVDGFLVGGASLK-PEFIDIINAATVK 251          
BLAST of GO241893 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 286.96 bits (733), Expect = 1.295e-76
Identity = 137/215 (63.72%), Postives = 169/215 (78.60%), Query Frame = 1
Query:    4 VDVVVAPPFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVTTKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSK 648
            V+VVV+PP+V++  VK+ L   I++AAQN WV KGGAFTGE+S E L ++G  WV+LGHSERR ++ E  +F+G+K AYAL++GL VIAC+GE L++REAG T +V  +Q KA AD I  W NVV+AYEPVWAIGTGKVA+P QAQEVHA LRDWLK NVS +V   TRIIYGGSV G++C ELA Q D+DGFLVGGASLK PEF  I+N+ T K
Sbjct:   38 VEVVVSPPYVFLPTVKDKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRSLLAESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIADKIKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQPDVDGFLVGGASLK-PEFIDIINAATVK 251          
BLAST of GO241893 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 282.722 bits (722), Expect = 2.442e-75
Identity = 136/215 (63.26%), Postives = 167/215 (77.67%), Query Frame = 1
Query:    4 VDVVVAPPFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVTTKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSK 648
            V+VVV+PP+V++  VK+ L   I++AAQN WV KGGAFTGE+S E L ++   WV+LGHSERR ++GE ++F+G K AYALS+GL VIAC+GE L++RE+G T DV   Q KA ++ I  W NVV+AYEPVWAIGTGKVATP+QAQEVH  LR WL  NVSA+V   TRIIYGGSV G+NC ELA + D+DGFLVGGASLK PEF  I+NS T K
Sbjct:   38 VEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKDWTNVVVAYEPVWAIGTGKVATPDQAQEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFLVGGASLK-PEFIDIINSATVK 251          
BLAST of GO241893 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 282.337 bits (721), Expect = 3.189e-75
Identity = 136/215 (63.26%), Postives = 166/215 (77.21%), Query Frame = 1
Query:    4 VDVVVAPPFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVTTKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSK 648
            V+VVV+PP+V++  VK  L   I++AAQN WV KGGAFTGE+S E L ++G  WV+LGHSERR ++GE  +F+G+K AYAL++GL VIAC+GE L++REAG T +V  +Q KA A  I  W N V+AYEPVWAIGTGKVATP QAQEVHA LRDWLK NVS +V   TRIIYGGSV G++C ELA Q D+DGFLVGGASLK PEF  I+N+   K
Sbjct:   38 VEVVVSPPYVFLPIVKAKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRSLLGESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIAGKIKDWSNGVVAYEPVWAIGTGKVATPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQADVDGFLVGGASLK-PEFIDIINAAAVK 251          
BLAST of GO241893 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 2.067e-74
Identity = 136/218 (62.39%), Postives = 164/218 (75.23%), Query Frame = 1
Query:    4 VDVVVAPPFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVTTKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 657
            V+VVV+PP+V++  VKN L     +AAQN WV KGGAFTGE+S E L ++   WV+LGHSERR ++GE ++F+G K AYALS+GL VIAC+GE L+ERE+G T DV   Q KA AD +  W NVV+AYEPVWAIGTGKVA+P QAQEVHA LR WL  NVS +V   TRIIYGGSVNG+NC EL  Q D+DGFLVGGASLK PEF  I+ +   K+ A
Sbjct:   38 VEVVVSPPYVFLPLVKNELRPDFHVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEERESGSTMDVVAAQTKAIADRVKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHAELRKWLAANVSPEVAASTRIIYGGSVNGANCKELGGQPDVDGFLVGGASLK-PEFIDIIKAAEVKRNA 254          
The following BLAST results are available for this feature:
BLAST of GO241893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIC_ARATH2.338e-11086.82Triosephosphate isomerase, chloroplastic OS=Arabid... [more]
TPIC_SPIOL6.803e-11085.45Triosephosphate isomerase, chloroplastic OS=Spinac... [more]
TPIC_FRAAN1.516e-10985.91Triosephosphate isomerase, chloroplastic OS=Fragar... [more]
TPIC_SECCE2.265e-10583.18Triosephosphate isomerase, chloroplastic OS=Secale... [more]
TPIS_STELP1.631e-8770.91Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]
TPIS_MAIZE9.915e-7764.19Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_SECCE1.295e-7663.72Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_ORYSJ2.442e-7563.26Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_HORVU3.189e-7563.26Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_PETHY2.067e-7462.39Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]

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Properties
Property NameValue
Genbank description541 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 679 5, mRNA sequence.