GO241878

Overview
NameGO241878
Unique NameGO241878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241878_ssr914 microsatellite GO241878_ssr914:914..925. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of GO241878 vs. ExPASy Swiss-Prot
Match: ACLY_MOUSE (ATP-citrate synthase OS=Mus musculus GN=Acly PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 7.548e-65
Identity = 120/239 (50.21%), Postives = 162/239 (67.78%), Query Frame = 3
Query:    9 IGDFIMGVFAVFQDLDFSFIEMNPFTLVNGGPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRTLLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAI 725
            +  FI G+F  ++DL F+++E+NP  +   G Y LD+  ++D TA +    KW +IEFP PFGR     E++I  LD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG  +EL NY EYSGAP+E++   YA+ ++   T +     + L+IGG IANFT+VA TF GI+RA+R+ +  LK   + IFVRRGGPNYQ GL  M  +G+  GIP+ V+G E  MT I   A+
Sbjct:  181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYILDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPEGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMAL 419          
BLAST of GO241878 vs. ExPASy Swiss-Prot
Match: ACLY_HUMAN (ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3)

HSP 1 Score: 247.669 bits (631), Expect = 7.548e-65
Identity = 123/241 (51.04%), Postives = 165/241 (68.46%), Query Frame = 3
Query:    9 IGDFIMGVFAVFQDLDFSFIEMNPFTLVNGGPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATAD--PDGRKRTLLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAI 725
            +  FI G+F  ++DL F+++E+NP  +   G Y LD+  ++D TA +    KW +IEFP PFGR     E++I  LD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG  +EL NY EYSGAP+E++   YA+ ++   T +  PDG  + L+IGG IANFT+VA TF GI+RA+R+ +  LK   + IFVRRGGPNYQ GL  M  +G+  GIP+ V+G E  MT I   A+
Sbjct:  181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG--KILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMAL 419          
BLAST of GO241878 vs. ExPASy Swiss-Prot
Match: ACLY_BOVIN (ATP-citrate synthase OS=Bos taurus GN=ACLY PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 7.548e-65
Identity = 123/241 (51.04%), Postives = 165/241 (68.46%), Query Frame = 3
Query:    9 IGDFIMGVFAVFQDLDFSFIEMNPFTLVNGGPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATAD--PDGRKRTLLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAI 725
            +  FI G+F  ++DL F+++E+NP  +   G Y LD+  ++D TA +    KW +IEFP PFGR     E++I  LD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG  +EL NY EYSGAP+E++   YA+ ++   T +  PDG  + L+IGG IANFT+VA TF GI+RA+R+ +  LK   + IFVRRGGPNYQ GL  M  +G+  GIP+ V+G E  MT I   A+
Sbjct:  181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG--KILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMAL 419          
BLAST of GO241878 vs. ExPASy Swiss-Prot
Match: ACLY_SHEEP (ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 9.857e-65
Identity = 123/241 (51.04%), Postives = 165/241 (68.46%), Query Frame = 3
Query:    9 IGDFIMGVFAVFQDLDFSFIEMNPFTLVNGGPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATAD--PDGRKRTLLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAI 725
            +  FI G+F  ++DL F+++E+NP  +   G Y LD+  ++D TA +    KW +IEFP PFGR     E++I  LD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG  +EL NY EYSGAP+E++   YA+ ++   T +  PDG  + L+IGG IANFT+VA TF GI+RA+R+ +  LK   + IFVRRGGPNYQ GL  M  +G+  GIP+ V+G E  MT I   A+
Sbjct:  181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYILDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG--KILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMAL 419          
BLAST of GO241878 vs. ExPASy Swiss-Prot
Match: ACLY_RAT (ATP-citrate synthase OS=Rattus norvegicus GN=Acly PE=1 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.287e-64
Identity = 123/240 (51.25%), Postives = 164/240 (68.33%), Query Frame = 3
Query:    9 IGDFIMGVFAVFQDLDFSFIEMNPFTLVNGGPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATAD--PDGRKRTLLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQA 722
            +  FI G+F  ++DL F+++E+NP  +   G Y LD+  ++D TA +    KW +IEFP PFGR     E++I  LD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG  +EL NY EYSGAP+E++   YA+ ++   T +  PDG  + L+IGG IANFT+VA TF GI+RA+R+ +  LK   + IFVRRGGPNYQ GL  M  +G+  GIP+ V+G E  MT I   A
Sbjct:  181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYILDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG--KILIIGGSIANFTNVAATFKGIVRAIRDYQGSLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMA 418          
BLAST of GO241878 vs. ExPASy Swiss-Prot
Match: ACLY_CAEEL (Probable ATP-citrate synthase OS=Caenorhabditis elegans GN=D1005.1 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 4.579e-62
Identity = 122/249 (49.00%), Postives = 165/249 (66.27%), Query Frame = 3
Query:   18 FIMGVFAVFQDLDFSFIEMNPFTLVNGGPYPLDMRGELDDTAAFKNFKKWAN----------IEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDC---ATADPDGRKRTLLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAI 725
            F++ ++  ++DL F+++E+NPF L+N   + LD+   LD+TA F    KW +          +EFP PFGR L+S E +I  +D KT ASLK T+LN KGR+WTMVAGGGASV++ DTV DLG ASEL NY EYSG P+E +  +YA+ ++      T  PDG  + L+IGG IANFT+VA TF GI+RA     SKLK  ++ IFVRRGGPNYQ GL +++    +L +P+ V+GPE  MT I   A+
Sbjct:  185 FVVELYKAYKDLHFTYLEINPFVLLNNQIHVLDLAARLDETANFLCADKWKSRLTPYGGPNHVEFPAPFGRDLTSEEQYISEMDAKTGASLKLTILNRKGRVWTMVAGGGASVVFTDTVCDLGGASELANYGEYSGDPSESQTYEYAKTLLSVMTEGTPRPDG--KVLIIGGSIANFTNVAKTFGGIVRAFETFVSKLKEHKVTIFVRRGGPNYQEGLRRIKDAATKLELPIHVFGPETHMTAIVGAAL 431          
BLAST of GO241878 vs. ExPASy Swiss-Prot
Match: ACL2_SCHPO (Probable ATP-citrate synthase subunit 2 OS=Schizosaccharomyces pombe GN=SPAC22A12.16 PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 7.081e-55
Identity = 114/263 (43.35%), Postives = 157/263 (59.70%), Query Frame = 3
Query:   15 DFIMGVFAVFQDLDFSFIEMNPFTLV----NGGPYPLDMRGELDDTAAFKNFKKWA--------------------------NIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCAT-ADPDGRKRTLLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGI 710
            DFI+ +++V+ D  F+++E+NP  ++        + LD+  +LD TA F+   KWA                           + FP PFGR LS  E+++  LD KT ASLK T+LN +GR+W +VAGGGASV+YAD V   G A EL NY EYSGAP + +  +YA+ V+D  T  +P    + L IGGGIANFT  A TF  I RAL + + KL A ++ I+VRR GPNYQ GL  +R  G++  +PL+VYGPE  ++GI
Sbjct:  213 DFIIRLYSVYVDCQFTYLEINPLVVIPTAKGADVFYLDLAAKLDQTAEFECGAKWAVARAPESLGIKTSGEESGAINADHGPPMVFPAPFGRELSKEEAYVQGLDAKTGASLKLTILNAEGRVWNLVAGGGASVVYADAVAVNGAADELANYGEYSGAPTDGQTYEYAKTVLDLMTRGEPRADGKVLFIGGGIANFTSPAVTFRAIARALGDYKDKLHAHKVSIWVRRAGPNYQEGLRVIREAGKKFDLPLKVYGPECHISGI 475          
The following BLAST results are available for this feature:
BLAST of GO241878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
ACLY_MOUSE7.548e-6550.21ATP-citrate synthase OS=Mus musculus GN=Acly PE=1 ... [more]
ACLY_HUMAN7.548e-6551.04ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 ... [more]
ACLY_BOVIN7.548e-6551.04ATP-citrate synthase OS=Bos taurus GN=ACLY PE=2 SV... [more]
ACLY_SHEEP9.857e-6551.04ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV... [more]
ACLY_RAT1.287e-6451.25ATP-citrate synthase OS=Rattus norvegicus GN=Acly ... [more]
ACLY_CAEEL4.579e-6249.00Probable ATP-citrate synthase OS=Caenorhabditis el... [more]
ACL2_SCHPO7.081e-5543.35Probable ATP-citrate synthase subunit 2 OS=Schizos... [more]
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Properties
Property NameValue
Genbank description526 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 663 5, mRNA sequence.