GO241875

Overview
NameGO241875
Unique NameGO241875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241875_ssr310 microsatellite GO241875_ssr310:310..321. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6287 contig Csv1_Contig6287:1466..1918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241875 vs. ExPASy Swiss-Prot
Match: ASPR_HORVU (Phytepsin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 6.847e-22
Identity = 47/58 (81.03%), Postives = 50/58 (86.21%), Query Frame = 2
Query:    2 QYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 175
            +YILK GEG A  CISGF A D+PPPRGPLWILGDVFMG YHTVFD GKLRIGFA+AA
Sbjct:  451 EYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKAA 508          
BLAST of GO241875 vs. ExPASy Swiss-Prot
Match: ASPR1_ORYSJ (Aspartic proteinase oryzasin-1 OS=Oryza sativa subsp. japonica GN=Os05g0567100 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.992e-21
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = 2
Query:    2 QYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 175
            +YILK GEG A  CISGF A D+PPPRGPLWILGDVFMG YHTVFD GK+R+GFA++A
Sbjct:  452 EYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGAYHTVFDYGKMRVGFAKSA 509          
BLAST of GO241875 vs. ExPASy Swiss-Prot
Match: ASPR_CUCPE (Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.398e-21
Identity = 46/58 (79.31%), Postives = 49/58 (84.48%), Query Frame = 2
Query:    2 QYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 175
            +YILK GEG    CISGF AFD+PPPRGPLWILGDVFMG YHTVFD GKLR+G AEAA
Sbjct:  456 EYILKVGEGPVAQCISGFTAFDIPPPRGPLWILGDVFMGRYHTVFDFGKLRVGSAEAA 513          
BLAST of GO241875 vs. ExPASy Swiss-Prot
Match: ASPRX_ORYSJ (Aspartic proteinase OS=Oryza sativa subsp. japonica GN=RAP PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.291e-20
Identity = 45/58 (77.59%), Postives = 50/58 (86.21%), Query Frame = 2
Query:    2 QYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 175
            QYI+K  +G   VCISGFMAFD+PPPRGPLWILGDVFMG YHTVFD GK RIGFA++A
Sbjct:  439 QYIVKLEQGGQTVCISGFMAFDIPPPRGPLWILGDVFMGAYHTVFDFGKDRIGFAKSA 496          
BLAST of GO241875 vs. ExPASy Swiss-Prot
Match: CYPR1_CYNCA (Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO1 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 8.369e-20
Identity = 43/58 (74.14%), Postives = 46/58 (79.31%), Query Frame = 2
Query:    2 QYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 175
            QY+LK GEG    CISGF A D+ PP GPLWILGDVFMG YHTVFD G LR+GFAEAA
Sbjct:  416 QYVLKVGEGATAQCISGFTAMDVAPPHGPLWILGDVFMGQYHTVFDYGNLRVGFAEAA 473          
BLAST of GO241875 vs. ExPASy Swiss-Prot
Match: CATD_MOUSE (Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.576e-16
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 2
Query:    2 QYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 172
            +YILK  +G   +C+SGFM  D+PPP GPLWILGDVF+G Y+TVFD    R+GFA A
Sbjct:  351 KYILKVSQGGKTICLSGFMGMDIPPPSGPLWILGDVFIGSYYTVFDRDNNRVGFANA 407          
BLAST of GO241875 vs. ExPASy Swiss-Prot
Match: CATD_RAT (Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.133e-15
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 2
Query:    2 QYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 175
            +YILK  +    +C+SGFM  D+PPP GPLWILGDVF+G Y+TVFD    R+GFA+AA
Sbjct:  348 KYILKVSQAGKTICLSGFMGMDIPPPSGPLWILGDVFIGCYYTVFDREYNRVGFAKAA 405          
BLAST of GO241875 vs. ExPASy Swiss-Prot
Match: CATD_HUMAN (Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.752e-15
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 2
Query:    5 YILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 175
            Y LK  +    +C+SGFM  D+PPP GPLWILGDVF+G Y+TVFD    R+GFAEAA
Sbjct:  354 YTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNRVGFAEAA 410          
BLAST of GO241875 vs. ExPASy Swiss-Prot
Match: CATD_BOVIN (Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 6.207e-15
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 2
Query:    5 YILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 175
            Y LK  +    VC+SGFM  D+PPP GPLWILGDVF+G Y+TVFD  + R+G AEAA
Sbjct:  332 YALKVSQAETTVCLSGFMGMDIPPPGGPLWILGDVFIGRYYTVFDRDQNRVGLAEAA 388          
BLAST of GO241875 vs. ExPASy Swiss-Prot
Match: CATD_CANFA (Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.059e-14
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 2
Query:    5 YILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 172
            Y LK  +G   +C+SGFM  D+PPP GPLWILGDVF+G Y+TVFD  + R+G A+A
Sbjct:  352 YTLKVSQGGKTICLSGFMGMDIPPPGGPLWILGDVFIGCYYTVFDRDQNRVGLAQA 407          
The following BLAST results are available for this feature:
BLAST of GO241875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
ASPR_HORVU6.847e-2281.03Phytepsin OS=Hordeum vulgare PE=1 SV=1[more]
ASPR1_ORYSJ1.992e-2175.86Aspartic proteinase oryzasin-1 OS=Oryza sativa sub... [more]
ASPR_CUCPE3.398e-2179.31Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1[more]
ASPRX_ORYSJ1.291e-2077.59Aspartic proteinase OS=Oryza sativa subsp. japonic... [more]
CYPR1_CYNCA8.369e-2074.14Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO... [more]
CATD_MOUSE9.576e-1661.40Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1[more]
CATD_RAT2.133e-1560.34Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1[more]
CATD_HUMAN4.752e-1561.40Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1[more]
CATD_BOVIN6.207e-1561.40Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2[more]
CATD_CANFA1.059e-1458.93Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1[more]

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Properties
Property NameValue
Genbank description523 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 660 5, mRNA sequence.