GO241870

Overview
NameGO241870
Unique NameGO241870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2880 contig Csv1_Contig2880:1108..1788. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241870 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.954e-49
Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 1
Query:    1 QIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 294
            QIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFS YPPLGRFAVRDMRQTVAVGVIKSV+KKDPSGA
Sbjct:  340 QIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSAYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGA 437          
BLAST of GO241870 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.684e-49
Identity = 94/98 (95.92%), Postives = 97/98 (98.98%), Query Frame = 1
Query:    1 QIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 294
            QIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKE+EKEPKFLKNGDAG VKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIK+VDKKDP+GA
Sbjct:  340 QIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVDKKDPTGA 437          
BLAST of GO241870 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 5.684e-49
Identity = 93/98 (94.90%), Postives = 98/98 (100.00%), Query Frame = 1
Query:    1 QIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 294
            QIGNGYAPVLDCHTSHIAVKFAE++TKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIK+V+KKDP+GA
Sbjct:  340 QIGNGYAPVLDCHTSHIAVKFAELMTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGA 437          
BLAST of GO241870 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.696e-49
Identity = 93/98 (94.90%), Postives = 97/98 (98.98%), Query Frame = 1
Query:    1 QIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 294
            QIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETF+EYPPLGRFAVRDMRQTVAVGV+K+VDKKDP+GA
Sbjct:  340 QIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVVKNVDKKDPTGA 437          
BLAST of GO241870 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.160e-48
Identity = 93/98 (94.90%), Postives = 96/98 (97.96%), Query Frame = 1
Query:    1 QIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 294
            QIGNGYAPVLDCHTSHIAVKF+EILTKIDRRSGKE+EKEPKFLKNGDAG VKM PTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDP+GA
Sbjct:  340 QIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGA 437          
BLAST of GO241870 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 3.684e-48
Identity = 92/98 (93.88%), Postives = 97/98 (98.98%), Query Frame = 1
Query:    1 QIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 294
            QIGNGYAPVLDCHTSHIAVKFAE++TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIK+V+KKDP+GA
Sbjct:  340 QIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGA 437          
BLAST of GO241870 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.812e-48
Identity = 91/98 (92.86%), Postives = 97/98 (98.98%), Query Frame = 1
Query:    1 QIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 294
            QIGNGYAPVLDCHTSHIAVKFAE++TKIDRRSGKE+EKEPKFLKNGDAG VKMIPTKPMVVETF+EYPPLGRFAVRDMRQTVAVGVIKSV+KKDP+GA
Sbjct:  340 QIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGA 437          
BLAST of GO241870 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.812e-48
Identity = 91/98 (92.86%), Postives = 97/98 (98.98%), Query Frame = 1
Query:    1 QIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 294
            QIGNGYAPVLDCHTSHIAVKFAE++TKIDRRSGKE+EKEPKFLKNGDAG VKMIPTKPMVVETF+EYPPLGRFAVRDMRQTVAVGVIKSV+KKDP+GA
Sbjct:  340 QIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGA 437          
BLAST of GO241870 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.812e-48
Identity = 91/98 (92.86%), Postives = 97/98 (98.98%), Query Frame = 1
Query:    1 QIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 294
            QIGNGYAPVLDCHTSHIAVKFAE++TKIDRRSGKELEKEPKFLKNGDAG VKM+PTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIKSV+KKDP+GA
Sbjct:  340 QIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGA 437          
BLAST of GO241870 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.285e-48
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 1
Query:    1 QIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 294
            QIGNGYAPVLDCHTSHIAVKFAEI TKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETF  YPPLGRFAVRDMRQTVAVGVIKSV+KKDP+GA
Sbjct:  340 QIGNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFMSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGA 437          
The following BLAST results are available for this feature:
BLAST of GO241870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
EF1A_MANES1.954e-4997.96Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A_TOBAC5.684e-4995.92Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_SOYBN5.684e-4994.90Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_SOLLC9.696e-4994.90Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A_ARATH2.160e-4894.90Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A_ORYSJ3.684e-4893.88Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_VICFA4.812e-4892.86Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_PEA4.812e-4892.86Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A_MAIZE4.812e-4892.86Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A2_DAUCA6.285e-4894.90Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]

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Properties
Property NameValue
Genbank description518 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 655 5, mRNA sequence.