GO241784

Overview
NameGO241784
Unique NameGO241784
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241784_ssr43 microsatellite GO241784_ssr43:43..54. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of GO241784 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 3.535e-12
Identity = 25/38 (65.79%), Postives = 32/38 (84.21%), Query Frame = 1
Query:  229 SEASSRKKSN*DNVLLAYEPVWAIGLGKVANPAQVQEI 342
            ++A + K S+ DNV+LAYEPVWAIG GKVA+PAQ QE+
Sbjct:   89 TKAIADKISSWDNVVLAYEPVWAIGTGKVASPAQAQEV 126          

HSP 2 Score: 38.5058 bits (88), Expect = 3.535e-12
Identity = 18/23 (78.26%), Postives = 18/23 (78.26%), Query Frame = 3
Query:  357 SNCKELAAQLDNDGFLGGGASLK 425
            SNCKEL  Q D DGFL GGASLK
Sbjct:  157 SNCKELGGQTDVDGFLVGGASLK 179          
BLAST of GO241784 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 48.9062 bits (115), Expect = 3.666e-11
Identity = 22/38 (57.89%), Postives = 29/38 (76.32%), Query Frame = 1
Query:  229 SEASSRKKSN*DNVLLAYEPVWAIGLGKVANPAQVQEI 342
            ++A + K  +  NV++AYEPVWAIG GKVA PAQ QE+
Sbjct:  148 TKAIAEKIKDWSNVVVAYEPVWAIGTGKVATPAQAQEV 185          

HSP 2 Score: 39.6614 bits (91), Expect = 3.666e-11
Identity = 19/23 (82.61%), Postives = 20/23 (86.96%), Query Frame = 3
Query:  357 SNCKELAAQLDNDGFLGGGASLK 425
            +NCKELAAQ D DGFL GGASLK
Sbjct:  216 ANCKELAAQPDVDGFLVGGASLK 238          
BLAST of GO241784 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 50.447 bits (119), Expect = 8.015e-11
Identity = 22/38 (57.89%), Postives = 31/38 (81.58%), Query Frame = 1
Query:  229 SEASSRKKSN*DNVLLAYEPVWAIGLGKVANPAQVQEI 342
            ++A + + +N  NV++AYEPVWAIG GKVA+PAQ QE+
Sbjct:  148 TKAIADRVTNWSNVVIAYEPVWAIGTGKVASPAQAQEV 185          

HSP 2 Score: 36.965 bits (84), Expect = 8.015e-11
Identity = 17/22 (77.27%), Postives = 17/22 (77.27%), Query Frame = 3
Query:  360 NCKELAAQLDNDGFLGGGASLK 425
            NCKEL  Q D DGFL GGASLK
Sbjct:  217 NCKELGGQADVDGFLVGGASLK 238          
The following BLAST results are available for this feature:
BLAST of GO241784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TPIS_LACSA3.535e-1265.79Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_MAIZE3.666e-1157.89Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_ARATH8.015e-1157.89Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank description432 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 568 5, mRNA sequence.