GO241777

Overview
NameGO241777
Unique NameGO241777
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241777_ssr12 microsatellite GO241777_ssr12:12..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2614 contig Csv1_Contig2614:118..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241777 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.012e-18
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 3
Query:   90 MSDTCDNCDCADRSQCVKKGSSYAADFVETD 182
            MSDTC NCDCAD++QCVKKGSSY AD +ET+
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETE 31          

HSP 2 Score: 53.9138 bits (128), Expect = 1.012e-18
Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = 2
Query:  212 VVMDVQAAEAEGNCKCGPTCACVNCTCG 295
            VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:   37 VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of GO241777 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 4.792e-14
Identity = 24/34 (70.59%), Postives = 25/34 (73.53%), Query Frame = 3
Query:   90 MSDTCDNCDCADRSQCVKKGSSYAADFVETDLRY 191
            MSD C NCDCAD SQCVKKG+S   D VETD  Y
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNS--IDIVETDKSY 32          

HSP 2 Score: 47.7506 bits (112), Expect = 4.792e-14
Identity = 19/27 (70.37%), Postives = 21/27 (77.78%), Query Frame = 2
Query:  212 VVMDVQAAEAEGNCKCGPTCACVNCTC 292
            VVM V AAE+ G CKCG +C CVNCTC
Sbjct:   36 VVMGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of GO241777 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 8.094e-14
Identity = 21/31 (67.74%), Postives = 24/31 (77.42%), Query Frame = 3
Query:   99 TCDNCDCADRSQCVKKGSSYAADFVETDLRY 191
            TC NCDC D+SQCVKKG+SY  D VET+  Y
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSY 33          

HSP 2 Score: 44.669 bits (104), Expect = 8.094e-14
Identity = 18/35 (51.43%), Postives = 24/35 (68.57%), Query Frame = 2
Query:  194 SFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCGS 298
            S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:   32 SYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of GO241777 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 1.777e-13
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 3
Query:   90 MSDTCDNCDCADRSQCVKKGSSYAADFVETDLR 188
            MS  CDNCDCAD +QCVKKG+SY    VET+ R
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENR 33          

HSP 2 Score: 45.8246 bits (107), Expect = 1.777e-13
Identity = 17/28 (60.71%), Postives = 21/28 (75.00%), Query Frame = 2
Query:  212 VVMDVQAAEAEGNCKCGPTCACVNCTCG 295
            V +D  AAE +G CKCG  C+CV+CTCG
Sbjct:   38 VFVDAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of GO241777 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 5.067e-13
Identity = 19/27 (70.37%), Postives = 22/27 (81.48%), Query Frame = 2
Query:  212 VVMDVQAAEAEGNCKCGPTCACVNCTC 292
            V+MD  AAE  GNCKCGP+CACV+C C
Sbjct:   38 VIMDAPAAENGGNCKCGPSCACVDCKC 64          

HSP 2 Score: 44.669 bits (104), Expect = 5.067e-13
Identity = 19/33 (57.58%), Postives = 22/33 (66.67%), Query Frame = 3
Query:   90 MSDTCDNCDCADRSQCVKKGSSYAADFVETDLR 188
            MS  C NCDC+D SQC KKG S+    VET+ R
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENR 33          
BLAST of GO241777 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 6.945e-12
Identity = 21/31 (67.74%), Postives = 24/31 (77.42%), Query Frame = 3
Query:   90 MSDTCDNCDCADRSQCVKKGSSYAADFVETD 182
            MSD C NCDCAD+SQCVKKG+SY    VE +
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAE 31          

HSP 2 Score: 39.6614 bits (91), Expect = 6.945e-12
Identity = 13/25 (52.00%), Postives = 17/25 (68.00%), Query Frame = 2
Query:  221 DVQAAEAEGNCKCGPTCACVNCTCG 295
            +V A E  G CKCG +C+C +C CG
Sbjct:   37 EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of GO241777 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 6.945e-12
Identity = 21/31 (67.74%), Postives = 24/31 (77.42%), Query Frame = 3
Query:   90 MSDTCDNCDCADRSQCVKKGSSYAADFVETD 182
            MSD C NCDCAD+SQCVKKG+SY    VE +
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAE 31          

HSP 2 Score: 39.6614 bits (91), Expect = 6.945e-12
Identity = 13/25 (52.00%), Postives = 17/25 (68.00%), Query Frame = 2
Query:  221 DVQAAEAEGNCKCGPTCACVNCTCG 295
            +V A E  G CKCG +C+C +C CG
Sbjct:   37 EVAAGEENGGCKCGTSCSCTDCKCG 61          
The following BLAST results are available for this feature:
BLAST of GO241777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
MT3_CARPA1.012e-1877.42Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_ACTDE4.792e-1470.59Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_MUSAC8.094e-1467.74Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_MALDO1.777e-1366.67Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3_PRUAV5.067e-1370.37Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3A_ORYSJ6.945e-1267.74Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI6.945e-1267.74Metallothionein-like protein 3A OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank description425 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 561 5, mRNA sequence.