GO241755

Overview
NameGO241755
Unique NameGO241755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1516 contig Csv1_Contig1516:599..1003. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241755 vs. ExPASy Swiss-Prot
Match: RS3A1_VITVI (40S ribosomal protein S3a-1 OS=Vitis vinifera GN=GSVIVT00020038001 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.975e-35
Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 1
Query:    4 AASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPMPEAPTEVIGA 261
            A SCDLK LV+KFI E IGREIEKATSSIYPLQNV+IRKVKILKAPKFDLGKLMEVHGDYSEDVG K++RPADEP+ E  TEVIGA
Sbjct:  176 ATSCDLKELVKKFIPESIGREIEKATSSIYPLQNVYIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKLERPADEPVAEGVTEVIGA 261          
BLAST of GO241755 vs. ExPASy Swiss-Prot
Match: RS3A_HELAN (40S ribosomal protein S3a OS=Helianthus annuus GN=RPS3A PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 2.580e-35
Identity = 75/87 (86.21%), Postives = 80/87 (91.95%), Query Frame = 1
Query:    1 QAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPMPEAPTEVIGA 261
            QA +CDLK LV+KFI E IGREIEKATSSIYPLQNVFIRKVKILKAPKFD+GKLMEVHGDYSEDVGVK+DRPA+E  PEA TEVIGA
Sbjct:  175 QAQTCDLKELVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRPAEEAAPEA-TEVIGA 260          
BLAST of GO241755 vs. ExPASy Swiss-Prot
Match: RS3A2_ARATH (40S ribosomal protein S3a-2 OS=Arabidopsis thaliana GN=RPS3AB PE=2 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 5.747e-35
Identity = 74/88 (84.09%), Postives = 78/88 (88.64%), Query Frame = 1
Query:    1 QAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKVDRPADEPMPEAPTEVIGA 261
            +A+SCDLK LV KFI E IGREIEKAT  IYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY +EDVGVKVDRPADE M E PTE+IGA
Sbjct:  175 EASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADETMVEEPTEIIGA 262          
BLAST of GO241755 vs. ExPASy Swiss-Prot
Match: RS3A_DAUCA (40S ribosomal protein S3a OS=Daucus carota GN=cyc07 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.184e-34
Identity = 71/87 (81.61%), Postives = 78/87 (89.66%), Query Frame = 1
Query:    1 QAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPMPEAPTEVIGA 261
            QA+SCDLK LV KFI E IGREIEKATSSI+PLQNVFIRKVKILKAPKFD+GKLMEVHGDYSEDVGVK++RP +E M E  TEV+GA
Sbjct:  175 QASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLERPIEETMVEGETEVVGA 261          
BLAST of GO241755 vs. ExPASy Swiss-Prot
Match: RS3A_TOBAC (40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.725e-34
Identity = 71/87 (81.61%), Postives = 78/87 (89.66%), Query Frame = 1
Query:    1 QAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPMPEAPTEVIGA 261
            QA+SCDLK LV KFI E IGREIEKATSSI+PLQNV+IRKVKILKAPKFD+GKLMEVHGDYSEDVGVK+DRPADE + EA  E+ GA
Sbjct:  175 QASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVYIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRPADETVAEAEPEIPGA 261          
BLAST of GO241755 vs. ExPASy Swiss-Prot
Match: RS3A1_ARATH (40S ribosomal protein S3a-1 OS=Arabidopsis thaliana GN=RPS3AA PE=1 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 3.725e-34
Identity = 73/88 (82.95%), Postives = 77/88 (87.50%), Query Frame = 1
Query:    1 QAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADEPMPEAPTEVIGA 261
            +A+SCDLK LV KFI E IGREIEKAT  IYPLQNVFIRKVKILKAPKFDLGKLM+VHGDYS EDVGVKVDRPADE   E PTE+IGA
Sbjct:  175 EASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMDVHGDYSAEDVGVKVDRPADEMAVEEPTEIIGA 262          
BLAST of GO241755 vs. ExPASy Swiss-Prot
Match: RS3A_CICAR (40S ribosomal protein S3a OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.084e-33
Identity = 69/87 (79.31%), Postives = 76/87 (87.36%), Query Frame = 1
Query:    1 QAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPMPEAPTEVIGA 261
            QA SCDLK LV KFI E+IG+EIEKATSSIYPLQNVFIRKVKILK+PKFDLGKLMEVHGDYSEDVG KV+ PADE + E   E++GA
Sbjct:  175 QATSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKSPKFDLGKLMEVHGDYSEDVGTKVESPADETVVEGTPEIVGA 261          
BLAST of GO241755 vs. ExPASy Swiss-Prot
Match: RS3A_CATRO (40S ribosomal protein S3a OS=Catharanthus roseus GN=RPS3A PE=2 SV=4)

HSP 1 Score: 140.198 bits (352), Expect = 3.153e-33
Identity = 73/88 (82.95%), Postives = 79/88 (89.77%), Query Frame = 1
Query:    1 QAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-DVGVKVDRPADEPMPEAPTEVIGA 261
            QA SCDLK LV+KFI E IGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY+E D+G K+DRPA+E + E PTEVIGA
Sbjct:  175 QAQSCDLKDLVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNEDDIGTKLDRPAEEAVAE-PTEVIGA 261          
BLAST of GO241755 vs. ExPASy Swiss-Prot
Match: RS3A_BRARA (40S ribosomal protein S3a OS=Brassica rapa GN=RPS3A PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 2.260e-31
Identity = 70/88 (79.55%), Postives = 77/88 (87.50%), Query Frame = 1
Query:    1 QAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKVDRPADEPMPEAPTEVIGA 261
            +A+SCDLK LV KFI E IG++IEKAT  IYPLQNVFIRKVKILKAPKFDL KLMEVHGDY +EDVGVKVDRPADE + E PTE+IGA
Sbjct:  176 EASSCDLKELVAKFIPESIGKDIEKATQGIYPLQNVFIRKVKILKAPKFDLRKLMEVHGDYTAEDVGVKVDRPADE-VVEEPTEIIGA 262          
BLAST of GO241755 vs. ExPASy Swiss-Prot
Match: RS3A_ORYSJ (40S ribosomal protein S3a OS=Oryza sativa subsp. japonica GN=RPS3A PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 1.619e-29
Identity = 62/76 (81.58%), Postives = 71/76 (93.42%), Query Frame = 1
Query:    1 QAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADE 225
            QA+SCDLK LV KFI EVIG+EIEKATSSI+PLQNVF+RKVKILKAPKFDLGKLMEVHGDY+ ED+G K+DRPA++
Sbjct:  175 QASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAED 250          
The following BLAST results are available for this feature:
BLAST of GO241755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
RS3A1_VITVI1.975e-3584.8840S ribosomal protein S3a-1 OS=Vitis vinifera GN=G... [more]
RS3A_HELAN2.580e-3586.2140S ribosomal protein S3a OS=Helianthus annuus GN=... [more]
RS3A2_ARATH5.747e-3584.0940S ribosomal protein S3a-2 OS=Arabidopsis thalian... [more]
RS3A_DAUCA2.184e-3481.6140S ribosomal protein S3a OS=Daucus carota GN=cyc0... [more]
RS3A_TOBAC3.725e-3481.6140S ribosomal protein S3a OS=Nicotiana tabacum GN=... [more]
RS3A1_ARATH3.725e-3482.9540S ribosomal protein S3a-1 OS=Arabidopsis thalian... [more]
RS3A_CICAR1.084e-3379.3140S ribosomal protein S3a OS=Cicer arietinum PE=2 ... [more]
RS3A_CATRO3.153e-3382.9540S ribosomal protein S3a OS=Catharanthus roseus G... [more]
RS3A_BRARA2.260e-3179.5540S ribosomal protein S3a OS=Brassica rapa GN=RPS3... [more]
RS3A_ORYSJ1.619e-2981.5840S ribosomal protein S3a OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank description403 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 535 5, mRNA sequence.