GO241751

Overview
NameGO241751
Unique NameGO241751
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11294 contig Csv1_Contig11294:878..1688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241751 vs. ExPASy Swiss-Prot
Match: RLMN_GEOSL (Ribosomal RNA large subunit methyltransferase N OS=Geobacter sulfurreducens GN=rlmN PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.460e-55
Identity = 116/229 (50.66%), Postives = 147/229 (64.19%), Query Frame = 1
Query:    1 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELRFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 687
            GCAM C+FC TG   L R+LT AEIV Q    +R +      + N+VFMGMGEPL N++NVI+A  IM+H+ GL FS R++TVST+GLVP++++        LAVSLNATTDE+R+ IMPINRKY L +L++  R         K+  EYV+L GVND+ DDAKRL+ L+  IP KINLI FN H G  F   + + +  F   L     TV  R SRG D  AACGQL
Sbjct:  112 GCAMACEFCLTGTFRLTRNLTTAEIVNQVCAVQRDVP-----VRNIVFMGMGEPLANLDNVIRALQIMLHDDGLQFSTRRITVSTAGLVPEMERLGRSVTVNLAVSLNATTDELRDRIMPINRKYPLAVLLDACR-RFPLPGRRKITIEYVLLGGVNDTLDDAKRLVRLLSDIPSKINLIPFNEHEGCSFRSPSQDAIDRFHRYLLDKHFTVITRSSRGADISAACGQL 334          
BLAST of GO241751 vs. ExPASy Swiss-Prot
Match: RLMN_PELCD (Ribosomal RNA large subunit methyltransferase N OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rlmN PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.221e-54
Identity = 113/239 (47.28%), Postives = 150/239 (62.76%), Query Frame = 1
Query:    1 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE-ELRFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAP 714
            GCAM C FC+TG  GL R+LT  EIV Q   A        G + N+V MGMGEPLHN++NV+KA  I+   QGL +SPRKVT+ST+GLVPQ+++        LAVSLNATTDEVRN +MP+N++Y L  L+   R+  L  K   ++ FEY+++  VNDS  DA+RL+ L+ GI  K+N+I FN H  S+F   T+E++  F+  L   G     R S+G D  AACGQL     +  P
Sbjct:  119 GCAMGCVFCHTGSFGLVRNLTPGEIVNQVCAALA-----DGPVNNIVLMGMGEPLHNLDNVVKALQILYMPQGLDYSPRKVTLSTAGLVPQMQELGKRVRVNLAVSLNATTDEVRNRLMPVNQRYPLQQLMAACRQYPLHAKK--RITFEYILIRDVNDSDQDARRLVKLLHGIKAKVNIIPFNEHSASEFRAPTEERISRFQGYLLDHGMVAIRRASKGQDISAACGQLKGKLTVSPP 350          
BLAST of GO241751 vs. ExPASy Swiss-Prot
Match: RLMN_GEOMG (Ribosomal RNA large subunit methyltransferase N OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rlmN PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.221e-54
Identity = 117/229 (51.09%), Postives = 146/229 (63.76%), Query Frame = 1
Query:    1 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELRFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 687
            GCAM C+FC TG   L R+LTA EIV Q    RR +      + N+VFMGMGEPL N++NV+KA  I++H+ GL FS R+VTVSTSGLVP++++   E    LAVSLNATTDEVR+ IMP+NR+Y L LL++  R         K+  EYVM+ G+NDS +DAKRL+ L+  I  KINLI FN H G  F       +  F + L     TV  R SRG D  AACGQL
Sbjct:  113 GCAMACEFCLTGTFRLTRNLTAGEIVNQICAVRRDVP-----VRNIVFMGMGEPLANLDNVVKALKIILHDDGLQFSTRRVTVSTSGLVPEMERLGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLRLLLDACR-SYPLPGRRKITIEYVMIKGLNDSLEDAKRLVKLLSDISSKINLIPFNEHDGCSFKSPDQGAIDVFHSYLLSKHFTVITRSSRGSDISAACGQL 335          
BLAST of GO241751 vs. ExPASy Swiss-Prot
Match: RLMN2_MYXXD (Ribosomal RNA large subunit methyltransferase N 2 OS=Myxococcus xanthus (strain DK 1622) GN=rlmN2 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.594e-54
Identity = 114/242 (47.11%), Postives = 156/242 (64.46%), Query Frame = 1
Query:    1 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS-----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELRFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQA 711
            GCAM C FC TG MGLKR+LT +EIV Q     R +    G      ++N+VFMGMGEPLHN EN+  A +I+  E G +FS R +TVST GLVP +++F  E++  LA+SLNA+TDE R+  MP+NRK+ +  L++  R +   +   ++ FEYV++ G ND+ +DA RLI L++GIP K+NLI +N + G  F  T +E+  EFR ILA      ++R +RG D   ACGQL N G  QA
Sbjct:  132 GCAMACGFCMTGTMGLKRNLTPSEIVAQVHAVNREVRKNEGHETLRPLSNLVFMGMGEPLHNFENLKTALSILQSEDGPNFSHRHITVSTVGLVPMIERFGKETDVKLAISLNASTDEQRSKTMPVNRKWNIAALLDACR-KFPLRQGRRITFEYVLIKGFNDADEDAHRLIELLKGIPVKVNLIPYNENPGLGFHTTGEERAEEFRAILADGHVAAYIRRNRGRDIAGACGQLANRGETQA 372          
BLAST of GO241751 vs. ExPASy Swiss-Prot
Match: RLMN_ANADF (Ribosomal RNA large subunit methyltransferase N OS=Anaeromyxobacter sp. (strain Fw109-5) GN=rlmN PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.639e-54
Identity = 121/256 (47.27%), Postives = 160/256 (62.50%), Query Frame = 1
Query:    1 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELRFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL---GNPG----AIQAPLLRVP 729
            GCA+ C FC TG MGL R+LT  EIVEQ   A R +  E+G       +TN+VFMGMGEPL N  ++  A ++++ E G +FS R VTVSTSGLVP +++   E+   LA+SLNATTD  R+ +MPINR+Y L  L+E  R     +N  ++ FEYV+L GVNDS +DA RL  LV+GIP K+NLI +N + G  +     E+++EF+  LA    T  +R +RG D  AACGQL   G PG        PL R+P
Sbjct:  121 GCAVGCTFCLTGTMGLARNLTPGEIVEQVHRANRRIV-ELGEGQGPRPLTNLVFMGMGEPLANYRSLKVALDLLLSEDGPNFSHRHVTVSTSGLVPMIRKLGEETPVKLAISLNATTDAQRDALMPINRRYPLAQLLEACR-SFPIRNGRRITFEYVLLGGVNDSLEDAVRLARLVRGIPTKVNLIPYNANPGLPYRAPAPERVVEFQETLAARNLTAVVRKNRGGDISAACGQLAAEGGPGDPRRPAPPPLTRLP 374          
BLAST of GO241751 vs. ExPASy Swiss-Prot
Match: RLMN_RHOSK (Ribosomal RNA large subunit methyltransferase N OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rlmN PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.763e-53
Identity = 108/238 (45.38%), Postives = 156/238 (65.55%), Query Frame = 1
Query:    1 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS---------EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELRFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 687
            GC + C FC+TG   L R+LTAAEIV Q +  R  L           E   ++N+V MGMGEPL+N ENV  A  +++  +GL  S R++T+STSG+VP++ +   E  C LA+S +ATTDEVR+ ++PIN+++ +  L+++LR+  R  N+ ++ FEYVML GVND+  DA+RL+ L+ GIP KINLI FN   G+ +  +T E++  F +I+  AG    +R  RG+D MAACGQL
Sbjct:  135 GCTLTCSFCHTGTQKLVRNLTAAEIVGQLMLVRDDLGEWPERGAPKDETRLVSNLVLMGMGEPLYNFENVRNAMKVVMDGEGLSLSRRRITLSTSGVVPEIARTAEEIGCQLAISFHATTDEVRDILVPINKRWNIRTLLDSLRDYPRLSNSERITFEYVMLDGVNDTDADARRLVKLISGIPSKINLIPFNEWPGAPYRRSTPERIAAFADIIYKAGYASPIRTPRGEDIMAACGQL 372          
BLAST of GO241751 vs. ExPASy Swiss-Prot
Match: RLMN_RHOS4 (Ribosomal RNA large subunit methyltransferase N OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rlmN PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.763e-53
Identity = 108/238 (45.38%), Postives = 156/238 (65.55%), Query Frame = 1
Query:    1 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS---------EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELRFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 687
            GC + C FC+TG   L R+LTAAEIV Q +  R  L           E   ++N+V MGMGEPL+N ENV  A  +++  +GL  S R++T+STSG+VP++ +   E  C LA+S +ATTDEVR+ ++PIN+++ +  L+++LR+  R  N+ ++ FEYVML GVND+  DA+RL+ L+ GIP KINLI FN   G+ +  +T E++  F +I+  AG    +R  RG+D MAACGQL
Sbjct:  135 GCTLTCSFCHTGTQKLVRNLTAAEIVGQLMLVRDDLGEWPERGAPKDETRLVSNLVLMGMGEPLYNFENVRNAMKVVMDGEGLSLSRRRITLSTSGVVPEIARTAEEIGCQLAISFHATTDEVRDILVPINKRWNIRTLLDSLRDYPRLSNSERITFEYVMLDGVNDTDADARRLVKLISGIPSKINLIPFNEWPGAPYRRSTPERIAAFADIIYKAGYASPIRTPRGEDIMAACGQL 372          
BLAST of GO241751 vs. ExPASy Swiss-Prot
Match: RLMN_RHOS1 (Ribosomal RNA large subunit methyltransferase N OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rlmN PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.763e-53
Identity = 108/238 (45.38%), Postives = 156/238 (65.55%), Query Frame = 1
Query:    1 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS---------EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELRFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 687
            GC + C FC+TG   L R+LTAAEIV Q +  R  L           E   ++N+V MGMGEPL+N ENV  A  +++  +GL  S R++T+STSG+VP++ +   E  C LA+S +ATTDEVR+ ++PIN+++ +  L+++LR+  R  N+ ++ FEYVML GVND+  DA+RL+ L+ GIP KINLI FN   G+ +  +T E++  F +I+  AG    +R  RG+D MAACGQL
Sbjct:  135 GCTLTCSFCHTGTQKLVRNLTAAEIVGQLMLVRDDLGEWPERGAPKDETRLVSNLVLMGMGEPLYNFENVRNAMKVVMDGEGLSLSRRRITLSTSGVVPEIARTAEEIGCQLAISFHATTDEVRDILVPINKRWNIRTLLDSLRDYPRLSNSERITFEYVMLDGVNDTDADARRLVKLISGIPSKINLIPFNEWPGAPYRRSTPERIAAFADIIYKAGYASPIRTPRGEDIMAACGQL 372          
BLAST of GO241751 vs. ExPASy Swiss-Prot
Match: RLMN_RHOS5 (Ribosomal RNA large subunit methyltransferase N OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rlmN PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.302e-53
Identity = 107/238 (44.96%), Postives = 155/238 (65.13%), Query Frame = 1
Query:    1 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS---------EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELRFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 687
            GC + C FC+TG   L R+LTA EIV Q +  R  L           E   ++N+V MGMGEPL+N ENV  A  +++  +GL  S R++T+STSG+VP++ +   E  C LA+S +ATTDEVR+ ++PIN+++ +  L+++LR+  R  N+ ++ FEYVML G+NDS  DA+RL+ L+ GIP KINLI FN   G+ +  +T E++  F +I+  AG    +R  RG+D MAACGQL
Sbjct:  135 GCTLTCSFCHTGTQKLVRNLTAGEIVGQVMLVRDDLGEWPERGAPKDETRLVSNLVLMGMGEPLYNFENVRNAMKVVMDGEGLSLSRRRITLSTSGVVPEIARTAEEIGCQLAISFHATTDEVRDILVPINKRWNIRTLLDSLRDYPRLSNSERITFEYVMLDGINDSDADARRLVKLISGIPSKINLIPFNEWPGAPYRRSTPERIAAFADIIYKAGYASPIRTPRGEDIMAACGQL 372          
BLAST of GO241751 vs. ExPASy Swiss-Prot
Match: RLMN_PARDP (Ribosomal RNA large subunit methyltransferase N OS=Paracoccus denitrificans (strain Pd 1222) GN=rlmN PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.007e-53
Identity = 109/238 (45.80%), Postives = 154/238 (64.71%), Query Frame = 1
Query:    1 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS---------EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELRFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 687
            GC + C FC+TG   L R+LTA EIV Q + AR  L           E   ++NVV MGMGEPL+N +NV  A  +++  +G+  S R++T+STSG+VP++ +   E  C LAVS +ATTDE R+ ++P+NRK+ +  L+  LRE  R  N+ ++ FEYVML GVNDS +DA+RL+ L++GIP K+NLI FN   GS +  +  E++  F +I+  AG    +R  RG+D MAACGQL
Sbjct:  134 GCTLTCSFCHTGTQKLVRNLTAGEIVGQVMVARDDLGEWPKPGAPKDETRLVSNVVLMGMGEPLYNFDNVRDAMKVVMDGEGISLSRRRITLSTSGIVPEIAKTAEEIGCLLAVSFHATTDETRDKLVPVNRKWNIETLLNALREYPRLSNSERITFEYVMLDGVNDSDEDARRLVRLIRGIPAKVNLIPFNEWPGSPYRRSGWERIEAFADIVHKAGYASPIRTPRGEDIMAACGQL 371          
The following BLAST results are available for this feature:
BLAST of GO241751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RLMN_GEOSL2.460e-5550.66Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PELCD1.221e-5447.28Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_GEOMG1.221e-5451.09Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN2_MYXXD1.594e-5447.11Ribosomal RNA large subunit methyltransferase N 2 ... [more]
RLMN_ANADF4.639e-5447.27Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_RHOSK1.763e-5345.38Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_RHOS41.763e-5345.38Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_RHOS11.763e-5345.38Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_RHOS52.302e-5344.96Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PARDP3.007e-5345.80Ribosomal RNA large subunit methyltransferase N OS... [more]

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Properties
Property NameValue
Genbank description399 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 531 5, mRNA sequence.