GO241689

Overview
NameGO241689
Unique NameGO241689
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241689_ssr12 microsatellite GO241689_ssr12:12..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2641 contig Csv1_Contig2641:221..877. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241689 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.531e-22
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 3
Query:   90 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCSSTCACVNCTCG 287
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKC  +C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of GO241689 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.840e-18
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 3
Query:   99 TCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCSSTCACVNCTCGS 290
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKC + CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of GO241689 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.710e-18
Identity = 43/65 (66.15%), Postives = 49/65 (75.38%), Query Frame = 3
Query:   90 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCSSTCACVNCTC 284
            MSD CGNCDCAD SQCVKKG+S   D VETD S++   VVM V AAE+ G CKC ++C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNS--IDIVETDKSYIED-VVMGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of GO241689 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.010e-15
Identity = 38/66 (57.58%), Postives = 46/66 (69.70%), Query Frame = 3
Query:   90 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCSSTCACVNCTCG 287
            MS  C NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE +G CKC + C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of GO241689 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.839e-15
Identity = 35/66 (53.03%), Postives = 43/66 (65.15%), Query Frame = 3
Query:   90 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCSSTCACVNCTCG 287
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKC ++C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of GO241689 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.839e-15
Identity = 35/66 (53.03%), Postives = 43/66 (65.15%), Query Frame = 3
Query:   90 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCSSTCACVNCTCG 287
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKC ++C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of GO241689 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.552e-15
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 3
Query:   90 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCSSTCACVNCTC 284
            MS  C NCDC+D SQC KKG S+    VET+   + T V+MD  AAE  GNCKC  +CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDT-VIMDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of GO241689 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.250e-14
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 3
Query:   90 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCSSTCACVNCTCG 287
            MSD CGNCDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC++ C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of GO241689 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.235e-13
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 3
Query:   90 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCSSTCACVNCTCG 287
            MSD CG+CDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC++ C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of GO241689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA5.531e-2266.67Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC2.840e-1859.38Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE3.710e-1866.15Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_MALDO1.010e-1557.58Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ3.839e-1553.03Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI3.839e-1553.03Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3_PRUAV8.552e-1555.38Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3B_ORYSJ3.250e-1450.00Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI1.235e-1348.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank description337 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 466 5, mRNA sequence.