GO241677

Overview
NameGO241677
Unique NameGO241677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4200 contig Csv1_Contig4200:21..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241677 vs. ExPASy Swiss-Prot
Match: R10A3_ARATH (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 4.936e-87
Identity = 164/196 (83.67%), Postives = 173/196 (88.27%), Query Frame = 3
Query:   63 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 650
            MSKLQS+A+REAISSI+ + KET  RNFTETIELQIGLKNYDPQKDKRFSGSVKLPH+PRPKMK+CMLGDAQHVEEAEKIGL+ MDVE                  +HAFLASESVIKQIPRLLGPGLNKAGKFPTLV+HQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK
Sbjct:    1 MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRPKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 196          
BLAST of GO241677 vs. ExPASy Swiss-Prot
Match: R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=2 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 8.713e-84
Identity = 162/196 (82.65%), Postives = 170/196 (86.73%), Query Frame = 3
Query:   63 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 650
            MSKLQS+A+REAI++I   S E  KRNF ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMK+CMLGDAQHVEEAEK+GL+ MDVE                  YHAFLASESVIKQIPRLLGPGLNKAGKFPTLV+HQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK
Sbjct:    1 MSKLQSEAVREAITTITGKS-EAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 195          
BLAST of GO241677 vs. ExPASy Swiss-Prot
Match: R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 9.633e-83
Identity = 159/196 (81.12%), Postives = 170/196 (86.73%), Query Frame = 3
Query:   63 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 650
            MSKLQS+A+REAI++I   S+E  KRNF ET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMK+CMLGDAQHVEEAEK+GL  MDVE                  YHAFLASESVIKQIPRLLGPGLNKAGKFPTLV+HQESLE+KVNETKATVKFQLKKVLCMGVAVGNLSMEEKQ+FQNVQMSVNFLVSLLKK
Sbjct:    1 MSKLQSEAVREAITTIKGKSEE-KKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKK 195          
BLAST of GO241677 vs. ExPASy Swiss-Prot
Match: RL10A_SPOFR (60S ribosomal protein L10a OS=Spodoptera frugiperda GN=RpL10A PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.599e-61
Identity = 117/195 (60.00%), Postives = 148/195 (75.90%), Query Frame = 3
Query:   66 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 650
            SK+  D L E +++++Q SK+  KRNF ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPKM+VC+LGD QH +EA+ + +  MD E                  Y AFLASES+IKQIPRLLGPGLNKAGKFP L++HQES+  K++E KAT+KFQ+KKVLC+ VAVG++ M   ++ QNV +S+NFLVSLLKK
Sbjct:    3 SKVSRDTLYECVNAVLQASKD-KKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKSLTVPCMDAEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKATIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKK 196          
BLAST of GO241677 vs. ExPASy Swiss-Prot
Match: R10AB_DROME (60S ribosomal protein L10a-2 OS=Drosophila melanogaster GN=RpL10Ab PE=1 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 2.088e-61
Identity = 116/195 (59.49%), Postives = 146/195 (74.87%), Query Frame = 3
Query:   66 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 650
            SK+  D L E ++ +++ S +  KR F ET+ELQIGLKNYDPQKDKRFSG+VKL HIPRPKMKVC+LGD QH +EA+   +D+MD E                  Y AFLASES+IKQIPRLLGPGLNKAGKFP L++HQES+  K+ E K+T+KFQ+KKVLC+ VAVG++ M+  ++ QNV +S+NFLVSLLKK
Sbjct:    3 SKVSRDTLYEGVNGLLEASAK-KKRGFLETVELQIGLKNYDPQKDKRFSGTVKLKHIPRPKMKVCILGDQQHCDEAKANNVDFMDAEALKKLNKNKKLVKKLAKSYDAFLASESLIKQIPRLLGPGLNKAGKFPALLSHQESMIGKIEEVKSTIKFQMKKVLCLSVAVGHVGMKSDELAQNVNLSINFLVSLLKK 196          
BLAST of GO241677 vs. ExPASy Swiss-Prot
Match: RL10A_NEUCR (60S ribosomal protein L10a OS=Neurospora crassa GN=rpl-10a PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.309e-60
Identity = 109/196 (55.61%), Postives = 147/196 (75.00%), Query Frame = 3
Query:   63 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 650
            MSK+   A+R+ ++ +++YS ET KRNF ET+ELQIGLKNYDPQ+DKRFSG+++LP IPRP M +C+LGD   ++ A+  G+D M V+                  Y AF+ASE++IKQIPRLLGPGL+KAGKFPT V+H + L  K+NE K+T+KFQLKKVLCMGVAVGN+ M ++Q+  N+ +++N+LVSLLKK
Sbjct:    1 MSKISVAAVRQHVTDLLEYSNETKKRNFLETVELQIGLKNYDPQRDKRFSGTIRLPSIPRPNMSICILGDQHDIDRAKHGGVDAMSVDDLKKLNKNKKLIKKLARKYDAFVASEALIKQIPRLLGPGLSKAGKFPTPVSHSDDLTGKLNEVKSTIKFQLKKVLCMGVAVGNVGMTQEQLVGNIMLAINYLVSLLKK 196          
BLAST of GO241677 vs. ExPASy Swiss-Prot
Match: RL10A_XENLA (60S ribosomal protein L10a OS=Xenopus laevis GN=rpl10a PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.655e-58
Identity = 110/195 (56.41%), Postives = 145/195 (74.36%), Query Frame = 3
Query:   66 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 650
            SK+  D L EA+  ++Q SK+  KR F ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  +C+LGD QH +EA+ + L +MD+E                  Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E+L +KV+E K+T+KFQ+KKVLC+ VAVG++ + E+++  N+ +S+NFLVSLLKK
Sbjct:    3 SKVSRDTLYEAVREVLQGSKK-KKRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSLCVLGDQQHCDEAKAVDLPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENLVAKVDEVKSTIKFQMKKVLCLAVAVGHVKLTEEELVYNIHLSINFLVSLLKK 196          
BLAST of GO241677 vs. ExPASy Swiss-Prot
Match: RL10A_DANRE (60S ribosomal protein L10a OS=Danio rerio GN=rpl10a PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 6.288e-58
Identity = 112/196 (57.14%), Postives = 141/196 (71.94%), Query Frame = 3
Query:   63 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 650
            MSK+  D L EA+   VQ      KR F ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  VC+LGD QH +EA+   L +MD+E                  Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E+L +KV+E K+T+KFQ+KKVLC+ VAVG++ M E+++  N+ ++VNFLVSLLKK
Sbjct:    1 MSKVSRDTLYEAVKE-VQAGSRRKKRKFLETVELQISLKNYDPQKDKRFSGTVRLKTTPRPKFSVCVLGDQQHCDEAKAAELPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENLGTKVDEVKSTIKFQMKKVLCLAVAVGHVKMSEEELVYNIHLAVNFLVSLLKK 195          
BLAST of GO241677 vs. ExPASy Swiss-Prot
Match: RL1_YEAST (60S ribosomal protein L1 OS=Saccharomyces cerevisiae GN=RPL1A PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.212e-58
Identity = 108/196 (55.10%), Postives = 140/196 (71.43%), Query Frame = 3
Query:   63 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 650
            MSK+ S  +RE +  +++YS ET KRNF ET+ELQ+GLKNYDPQ+DKRFSGS+KLP+ PRP M +C+ GDA  V+ A+  G+D M V+                  Y+AF+ASE +IKQ+PRLLGP L+KAGKFPT V+H + L  KV + ++T+KFQLKKVLC+ VAVGN+ MEE  +   + MSVNF VSLLKK
Sbjct:    1 MSKITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPRPNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEEDVLVNQILMSVNFFVSLLKK 196          
BLAST of GO241677 vs. ExPASy Swiss-Prot
Match: RL10A_CAEEL (60S ribosomal protein L10a OS=Caenorhabditis elegans GN=rpl-10a PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.389e-57
Identity = 110/196 (56.12%), Postives = 144/196 (73.47%), Query Frame = 3
Query:   63 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 650
            MSK+  ++L EAI+ +++ S E   R F ETIELQIGLKNYDPQKDKRFSGS++L HIPRP MKVC+ GD  H++EA    +  M  +                  Y AF+ASES+IKQIPR+LGPGLNKAGKFP++VTH ESL+SK +E +ATVKFQ+KKVLC+ VAVG++ + ++++  N+ +S+NFLVSLLKK
Sbjct:    1 MSKVSRESLNEAIAEVLKGSSE-KPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKK 195          
The following BLAST results are available for this feature:
BLAST of GO241677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
R10A3_ARATH4.936e-8783.6760S ribosomal protein L10a-3 OS=Arabidopsis thalia... [more]
R10A1_ARATH8.713e-8482.6560S ribosomal protein L10a-1 OS=Arabidopsis thalia... [more]
R10A2_ARATH9.633e-8381.1260S ribosomal protein L10a-2 OS=Arabidopsis thalia... [more]
RL10A_SPOFR1.599e-6160.0060S ribosomal protein L10a OS=Spodoptera frugiperd... [more]
R10AB_DROME2.088e-6159.4960S ribosomal protein L10a-2 OS=Drosophila melanog... [more]
RL10A_NEUCR2.309e-6055.6160S ribosomal protein L10a OS=Neurospora crassa GN... [more]
RL10A_XENLA1.655e-5856.4160S ribosomal protein L10a OS=Xenopus laevis GN=rp... [more]
RL10A_DANRE6.288e-5857.1460S ribosomal protein L10a OS=Danio rerio GN=rpl10... [more]
RL1_YEAST8.212e-5855.1060S ribosomal protein L1 OS=Saccharomyces cerevisi... [more]
RL10A_CAEEL2.389e-5756.1260S ribosomal protein L10a OS=Caenorhabditis elega... [more]

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Properties
Property NameValue
Genbank description325 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 454 5, mRNA sequence.