GO241674

Overview
NameGO241674
Unique NameGO241674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig261 contig Csv1_Contig261:1..657. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241674 vs. ExPASy Swiss-Prot
Match: GEML1_ARATH (GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.558e-59
Identity = 113/163 (69.33%), Postives = 131/163 (80.37%), Query Frame = 1
Query:  187 HSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPI-NESAATTMPAESNPYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLST 672
            HSSDYAPYPK+DP DV PPP           P PI   +AATTMPAESNPYVSPSP    + +N ++SVK  L  WGK AA+ATK+AEDLAGN WQHLKTGPS+ADAAV RIAQ TK+LAEGGYEK+F+Q+FD +P+E+LLKTYACYLSTSAGPV+GV+YLST
Sbjct:   28 HSSDYAPYPKLDPTDVTPPP-----------PQPIPTGAAATTMPAESNPYVSPSP----APRNTMDSVKDTLGKWGKMAADATKKAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLST 175          
BLAST of GO241674 vs. ExPASy Swiss-Prot
Match: GEM_ARATH (GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.055e-43
Identity = 88/144 (61.11%), Postives = 110/144 (76.39%), Query Frame = 1
Query:  250 NWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPS--SSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTA 675
            +WS    +    P ++ AA++  A SNPY++ SP E S  S K+ +E+VKG L  WGK+ AEA K+ E LAGN WQHL+T PS ADAA+GRIAQ TKV AEGGYEKIFRQ+F+T PEEQLL ++ACYLSTSAGPV+GVLY+S+A
Sbjct:   71 HWSPELVSGSQEP-DQKAASSSSAGSNPYIARSPAETSDASLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSA 213          
BLAST of GO241674 vs. ExPASy Swiss-Prot
Match: GEML3_ARATH (Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 1.991e-38
Identity = 82/144 (56.94%), Postives = 103/144 (71.53%), Query Frame = 1
Query:  250 NWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPS--SSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTA 675
            +W+    +  PAP  ++ +++  A SNPYV+ +P E S  S K  +ESVKG L  WG++  EA  +AE LAGN WQH         AA+GRIAQ TKVLAEGGYEKIFRQ+F+TVPEEQL  ++ACYLSTSAGPV+GVLY+STA
Sbjct:   29 HWNPELVSESPAPDEKALSSSSAARSNPYVARAPTETSDASLKETMESVKGVLGRWGRRVGEAAMKAESLAGNTWQHPLR------AAMGRIAQSTKVLAEGGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVSTA 166          
BLAST of GO241674 vs. ExPASy Swiss-Prot
Match: GEML5_ARATH (GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.338e-26
Identity = 65/176 (36.93%), Postives = 97/176 (55.11%), Query Frame = 1
Query:  175 QQEPHSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPI----NESAATTMPAESN-----PYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTA 675
            Q++P + +    P  +P+  +P  + W         AP+    N+ AA  +  ++      PYV  SP+E  ++ N LE V G    W +KA       E +A N+W +LKTGPS+++ A G++    K + +GG+E +FRQ F T P E L KT+ACYLST+ GPV G +YLS A
Sbjct:   15 QEQPKTLETEHQP--EPSSSSPDQKKWGTHVMGAPAAPVAHPDNQQAAAWVAGDNQQTQYQPYVIYSPVEHPTTNNPLEPVIGMFHTWSRKA-------ETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNA 181          
BLAST of GO241674 vs. ExPASy Swiss-Prot
Match: GEML2_ARATH (GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.173e-22
Identity = 49/114 (42.98%), Postives = 77/114 (67.54%), Query Frame = 1
Query:  328 NPYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLS 669
            NPYV  +    +S K   + V   L+  GKK  +AT++AE L G +  HLK  PS++DAA+ R++Q TK++ EGG E++F++ F  +  E+LL ++ CY+ST++GPV GV+Y+S
Sbjct:   29 NPYVHITSPTSASDKRSKDKVLEVLNRCGKKVEDATRKAEALVGGLKDHLKFSPSISDAAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYIS 142          
BLAST of GO241674 vs. ExPASy Swiss-Prot
Match: GEML6_ARATH (GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.883e-11
Identity = 38/105 (36.19%), Postives = 56/105 (53.33%), Query Frame = 1
Query:  358 PSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLST 672
            P+SSK    + KG      KK    T  A D         K GP L +    +++   K+L  GG EKI+++ F    +E+L K Y CYLST+AGP+ G+L++S+
Sbjct:   36 PTSSKVSYLTGKGKSMLRKKKTDSFTNGARDQD-------KLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAYQCYLSTTAGPIAGLLFISS 133          
The following BLAST results are available for this feature:
BLAST of GO241674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GEML1_ARATH4.558e-5969.33GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1... [more]
GEM_ARATH2.055e-4361.11GLABRA2 expression modulator OS=Arabidopsis thalia... [more]
GEML3_ARATH1.991e-3856.94Putative GEM-like protein 3 OS=Arabidopsis thalian... [more]
GEML5_ARATH1.338e-2636.93GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g... [more]
GEML2_ARATH1.173e-2242.98GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g... [more]
GEML6_ARATH7.883e-1136.19GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g... [more]
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Properties
Property NameValue
Genbank description322 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 451 5, mRNA sequence.