GO241642

Overview
NameGO241642
Unique NameGO241642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11087 contig Csv1_Contig11087:443..1067. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241642 vs. ExPASy Swiss-Prot
Match: IPO5_MOUSE (Importin-5 OS=Mus musculus GN=Ipo5 PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 2.838e-25
Identity = 59/129 (45.74%), Postives = 82/129 (63.57%), Query Frame = 2
Query:    2 DEHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSIDAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAE 388
            D  P+VRQAA YG+GV A+FGG  ++P   +AL  L  VI+ P A   +NV A +N +SA+GKI +F  D ++  +V+P WLS LPL  D  EA    + LC ++E +   +LGPN+  LPKI +I AE
Sbjct:  916 DNSPEVRQAAAYGLGVMAQFGGDNYRPFCTDALPLLVRVIQAPEAKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEEAVQTFSYLCDLIESNHPIVLGPNNTNLPKIFSIIAE 1044          
BLAST of GO241642 vs. ExPASy Swiss-Prot
Match: RNBP6_HUMAN (Ran-binding protein 6 OS=Homo sapiens GN=RANBP6 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 5.352e-24
Identity = 56/129 (43.41%), Postives = 84/129 (65.12%), Query Frame = 2
Query:    2 DEHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSIDAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAE 388
            D +P+VRQAA YG+GV A+FGG  ++ L  EA+  L  VI+  N+    NV+A +N +SA+GKI +F  + ++  +V+P WLS LPL  D  EA    + LC ++E +   ++GPN+  LPKI++I AE
Sbjct:  924 DNNPEVRQAAAYGLGVMAQFGGDDYRSLCSEAVPLLVKVIKCANSKTKKNVIATENCISAIGKILKFKPNCVNVDEVLPHWLSWLPLHEDKEEAIQTLSFLCDLIESNHPVVIGPNNSNLPKIISIIAE 1052          
BLAST of GO241642 vs. ExPASy Swiss-Prot
Match: IPO5_HUMAN (Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4)

HSP 1 Score: 110.538 bits (275), Expect = 6.989e-24
Identity = 57/129 (44.19%), Postives = 81/129 (62.79%), Query Frame = 2
Query:    2 DEHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSIDAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAE 388
            D  P+VRQAA YG+GV A++GG  ++P   EAL  L  VI+  ++   +NV A +N +SA+GKI +F  D ++  +V+P WLS LPL  D  EA      LC ++E +   +LGPN+  LPKI +I AE
Sbjct:  916 DNSPEVRQAAAYGLGVMAQYGGDNYRPFCTEALPLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEEAVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSIIAE 1044          
BLAST of GO241642 vs. ExPASy Swiss-Prot
Match: RNBP6_MOUSE (Ran-binding protein 6 OS=Mus musculus GN=Ranbp6 PE=2 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.192e-23
Identity = 56/129 (43.41%), Postives = 83/129 (64.34%), Query Frame = 2
Query:    2 DEHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSIDAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAE 388
            D +P+VRQAA YG+GV A+FGG  ++ L  EA+  L  VI+  N+    NV+A +N +SA+GKI +F  + ++  +V+P WLS LPL  D  EA      LC ++E +   ++GPN+  LPKI++I AE
Sbjct:  924 DNNPEVRQAAAYGLGVMAQFGGDDYRSLCSEAVPLLVKVIKCANSKTKKNVIATENCISAIGKILKFKPNCVNVDEVLPHWLSWLPLHEDKEEAIQTLNFLCDLIESNHPVVIGPNNSNLPKIISIIAE 1052          
BLAST of GO241642 vs. ExPASy Swiss-Prot
Match: IMB3_SCHPO (Importin subunit beta-3 OS=Schizosaccharomyces pombe GN=sal3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.250e-13
Identity = 42/132 (31.82%), Postives = 70/132 (53.03%), Query Frame = 2
Query:   11 PDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSI-DAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGG 403
            P++RQAA YGIGV A+ GG ++  +   AL  L  ++  P+A   + + A +N   A+ KIC+F    + D  +VV  W++ LP+  D  +A   +  L  ++E++   +       +P I+TI AE    G
Sbjct:  923 PEIRQAASYGIGVAAQHGGELYAEICSSALPALFKMLELPDARDEEQIYATENICVAICKICRFCSQRVQDLDKVVTYWINTLPVTHDEDDAPYAYTFLAELMEQNHVAVA----SQMPTIITILAETFASG 1050          
The following BLAST results are available for this feature:
BLAST of GO241642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
IPO5_MOUSE2.838e-2545.74Importin-5 OS=Mus musculus GN=Ipo5 PE=1 SV=3[more]
RNBP6_HUMAN5.352e-2443.41Ran-binding protein 6 OS=Homo sapiens GN=RANBP6 PE... [more]
IPO5_HUMAN6.989e-2444.19Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4[more]
RNBP6_MOUSE1.192e-2343.41Ran-binding protein 6 OS=Mus musculus GN=Ranbp6 PE... [more]
IMB3_SCHPO7.250e-1331.82Importin subunit beta-3 OS=Schizosaccharomyces pom... [more]
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Properties
Property NameValue
Genbank description290 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 415 5, mRNA sequence.