GO241637

Overview
NameGO241637
Unique NameGO241637
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241637_ssr446 microsatellite GO241637_ssr446:446..455. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2589 contig Csv1_Contig2589:441..1055. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241637 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSJ (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.039e-20
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 1
Query:  151 TATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 306
            TA C+DIL+A+ILPPLGVFLKFGC  EFWICLLLT LGYIPGIIYA+YAITK
Sbjct:    4 TANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55          
BLAST of GO241637 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.039e-20
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 1
Query:  151 TATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 306
            TA C+DIL+A+ILPPLGVFLKFGC  EFWICLLLT LGYIPGIIYA+YAITK
Sbjct:    4 TANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55          
BLAST of GO241637 vs. ExPASy Swiss-Prot
Match: LTI6A_ORYSJ (Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.747e-20
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 1
Query:  136 MADGSTATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 306
            MAD STATC+DI+LA+ILPPLGVF KFGC  EFWICLLLT  GY+PGIIYAV+ ITK
Sbjct:    1 MAD-STATCIDIILAIILPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56          
BLAST of GO241637 vs. ExPASy Swiss-Prot
Match: RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 41/53 (77.36%), Postives = 49/53 (92.45%), Query Frame = 1
Query:  148 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 306
            STAT V+I+LA+ILPPLGVFLKFGCK EFWICL+LT+ GY+PGI+YA+Y ITK
Sbjct:    2 STATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54          
BLAST of GO241637 vs. ExPASy Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.558e-19
Identity = 40/53 (75.47%), Postives = 49/53 (92.45%), Query Frame = 1
Query:  148 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 306
            STAT VDI++A++LPPLGVFL+FGC  EFWICL+LT+LGYIPGIIYA+Y +TK
Sbjct:    2 STATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54          
BLAST of GO241637 vs. ExPASy Swiss-Prot
Match: OSR8_ORYSJ (Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica GN=OSR8 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.975e-15
Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 1
Query:  136 MADGSTATCVDILLAVILPPLGVFLKFGC-KAEFWICLLLTILGYIPGIIYAVYAI 300
            MA G   T ++ILLA+ILPPLGVFL+FGC   EF ICLLLTILGY+PGIIYAVY +
Sbjct:    1 MASGRCCTFLEILLAIILPPLGVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVL 56          
BLAST of GO241637 vs. ExPASy Swiss-Prot
Match: LT02_HORVU (Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.975e-15
Identity = 34/51 (66.67%), Postives = 46/51 (90.20%), Query Frame = 1
Query:  148 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 300
            ++AT ++++LA+ILPP+GVFL++G   EFWICLLLT+LGYIPGIIYAVY +
Sbjct:    2 ASATFIEVILAIILPPVGVFLRYGLAVEFWICLLLTLLGYIPGIIYAVYVL 52          
BLAST of GO241637 vs. ExPASy Swiss-Prot
Match: LT01_HORVU (Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.183e-14
Identity = 34/50 (68.00%), Postives = 44/50 (88.00%), Query Frame = 1
Query:  151 TATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 300
            +AT ++++LA+ILPP+GVFL++    EFWICLLLTILGYIPGIIYAVY +
Sbjct:    3 SATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVL 52          
BLAST of GO241637 vs. ExPASy Swiss-Prot
Match: ESI3_LOPEL (Salt stress-induced hydrophobic peptide ESI3 OS=Lophopyrum elongatum GN=ESI3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.183e-14
Identity = 34/50 (68.00%), Postives = 44/50 (88.00%), Query Frame = 1
Query:  151 TATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 300
            +AT ++++LA+ILPP+GVFL++    EFWICLLLTILGYIPGIIYAVY +
Sbjct:    3 SATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVL 52          
BLAST of GO241637 vs. ExPASy Swiss-Prot
Match: PMP3_DEBHA (Plasma membrane proteolipid 3 OS=Debaryomyces hansenii GN=PMP3 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.043e-12
Identity = 34/53 (64.15%), Postives = 43/53 (81.13%), Query Frame = 1
Query:  157 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 306
            TC DI   ++A+ILPPLGVFL+ GC + FWI ++LTILGYIPGII+A+Y I K
Sbjct:    4 TCSDIFKIIIAIILPPLGVFLERGCASSFWINIVLTILGYIPGIIHALYVILK 56          
The following BLAST results are available for this feature:
BLAST of GO241637 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
LTI6B_ORYSJ2.039e-2084.62Hydrophobic protein LTI6B OS=Oryza sativa subsp. j... [more]
LTI6B_ORYSI2.039e-2084.62Hydrophobic protein LTI6B OS=Oryza sativa subsp. i... [more]
LTI6A_ORYSJ7.747e-2078.95Hydrophobic protein LTI6A OS=Oryza sativa subsp. j... [more]
RCI2B_ARATH3.845e-1977.36Hydrophobic protein RCI2B OS=Arabidopsis thaliana ... [more]
RCI2A_ARATH6.558e-1975.47Hydrophobic protein RCI2A OS=Arabidopsis thaliana ... [more]
OSR8_ORYSJ1.975e-1571.43Hydrophobic protein OSR8 OS=Oryza sativa subsp. ja... [more]
LT02_HORVU1.975e-1566.67Low temperature-induced protein lt101.2 OS=Hordeum... [more]
LT01_HORVU2.183e-1468.00Low temperature-induced protein lt101.1 OS=Hordeum... [more]
ESI3_LOPEL2.183e-1468.00Salt stress-induced hydrophobic peptide ESI3 OS=Lo... [more]
PMP3_DEBHA2.043e-1264.15Plasma membrane proteolipid 3 OS=Debaryomyces hans... [more]

Pages

back to top
Properties
Property NameValue
Genbank description285 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 410 5, mRNA sequence.