GO241630

Overview
NameGO241630
Unique NameGO241630
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13748 contig Csv1_Contig13748:1..601. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241630 vs. ExPASy Swiss-Prot
Match: SODC2_MESCR (Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum GN=SODCC.2 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.219e-46
Identity = 85/112 (75.89%), Postives = 96/112 (85.71%), Query Frame = 1
Query:  259 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHAGDLGNIVAGPDGVAEVSIADRMIPLTGQHSIWGXGLLL 594
            +I+G  +VKGSL F+Q   GVTHVKG+ITGL PGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAP D ERHAGDLGN+VAG DGVAEVS+ D  IPL+GQHSI G  +++
Sbjct:    9 VINGNNNVKGSLQFIQDSTGVTHVKGRITGLTPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPFDTERHAGDLGNVVAGADGVAEVSVRDTQIPLSGQHSILGRAVVV 120          
BLAST of GO241630 vs. ExPASy Swiss-Prot
Match: SODC_PINSY (Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris GN=SODCC PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.764e-37
Identity = 70/112 (62.50%), Postives = 85/112 (75.89%), Query Frame = 1
Query:  259 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHAGDLGNIVAGPDGVAEVSIADRMIPLTGQHSIWGXGLLL 594
            +++GA  VKG + F Q  +G T V GKI+GL PGLHGFH+HALGDTTNGC STGPHFNPL K+HGAP+D+ RHAGDLGN+  G DG  E SI D  IPL+G HSI G  +++
Sbjct:    9 VLNGAADVKGVVQFTQEGDGPTTVTGKISGLSPGLHGFHVHALGDTTNGCMSTGPHFNPLGKEHGAPTDDNRHAGDLGNVTVGTDGTVEFSITDSQIPLSGPHSIVGRAVVV 120          
BLAST of GO241630 vs. ExPASy Swiss-Prot
Match: SODC2_ORYSJ (Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa subsp. japonica GN=SODCC2 PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 3.008e-37
Identity = 69/112 (61.61%), Postives = 86/112 (76.79%), Query Frame = 1
Query:  259 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHAGDLGNIVAGPDGVAEVSIADRMIPLTGQHSIWGXGLLL 594
            +++ +  VKG++ F Q  +G T V G ++GLKPGLHGFH+HALGDTTNGC STGPHFNP  K+HGAP D  RHAGDLGNI AG DGVA V+++D  IPLTG HSI G  +++
Sbjct:    7 VLASSEGVKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVV 118          
BLAST of GO241630 vs. ExPASy Swiss-Prot
Match: SODC2_MAIZE (Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 8.753e-37
Identity = 69/111 (62.16%), Postives = 83/111 (74.77%), Query Frame = 1
Query:  262 ISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHAGDLGNIVAGPDGVAEVSIADRMIPLTGQHSIWGXGLLL 594
            +   T VKG++ F Q  +G T V G I+GLKPGLHGFH+HALGDTTNGC STGPHFNP+ K+HGAP D +RHAGDLGN+ AG DGV  V+I D  IPL G HSI G  +++
Sbjct:    7 VLAGTDVKGTIFFSQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPVGKEHGAPEDEDRHAGDLGNVTAGEDGVVNVNITDSQIPLAGPHSIIGRAVVV 117          
BLAST of GO241630 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSJ (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. japonica GN=SODCC1 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 8.753e-37
Identity = 68/112 (60.71%), Postives = 85/112 (75.89%), Query Frame = 1
Query:  259 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHAGDLGNIVAGPDGVAEVSIADRMIPLTGQHSIWGXGLLL 594
            ++  +  VKG++HFVQ  +G T V G ++GLKPGLHGFHIHALGDTTNGC STGPH+NP  K+HGAP D  RHAGDLGN+ AG DGVA + + D  IPLTG +SI G  +++
Sbjct:    7 VLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVV 118          
BLAST of GO241630 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSI (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. indica GN=SODCC1 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 8.753e-37
Identity = 68/112 (60.71%), Postives = 85/112 (75.89%), Query Frame = 1
Query:  259 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHAGDLGNIVAGPDGVAEVSIADRMIPLTGQHSIWGXGLLL 594
            ++  +  VKG++HFVQ  +G T V G ++GLKPGLHGFHIHALGDTTNGC STGPH+NP  K+HGAP D  RHAGDLGN+ AG DGVA + + D  IPLTG +SI G  +++
Sbjct:    7 VLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVV 118          
BLAST of GO241630 vs. ExPASy Swiss-Prot
Match: SODC5_MAIZE (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 5.674e-36
Identity = 65/112 (58.04%), Postives = 84/112 (75.00%), Query Frame = 1
Query:  259 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHAGDLGNIVAGPDGVAEVSIADRMIPLTGQHSIWGXGLLL 594
            ++  +  VKG++ F Q  +G T V G ++GLKPGLHGFH+HALGDTTNGC STGPH+NP  K+HGAP D  RHAGDLGN+ AG DGVA +++ D  IPLTG +SI G  +++
Sbjct:    7 VLGSSDGVKGTIFFTQEGDGPTAVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVV 118          
BLAST of GO241630 vs. ExPASy Swiss-Prot
Match: SODC4_MAIZE (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 5.674e-36
Identity = 65/112 (58.04%), Postives = 84/112 (75.00%), Query Frame = 1
Query:  259 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHAGDLGNIVAGPDGVAEVSIADRMIPLTGQHSIWGXGLLL 594
            ++  +  VKG++ F Q  +G T V G ++GLKPGLHGFH+HALGDTTNGC STGPH+NP  K+HGAP D  RHAGDLGN+ AG DGVA +++ D  IPLTG +SI G  +++
Sbjct:    7 VLGSSEGVKGTIFFTQEGDGPTTVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVV 118          
BLAST of GO241630 vs. ExPASy Swiss-Prot
Match: SODC_PANGI (Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=SODCC PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.651e-35
Identity = 66/112 (58.93%), Postives = 82/112 (73.21%), Query Frame = 1
Query:  259 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHAGDLGNIVAGPDGVAEVSIADRMIPLTGQHSIWGXGLLL 594
            ++SG+  V G +HF Q  +G T V GK++GL PGLHGFH+HALGDTTNGC STGPH+NP  K+HGAP D  RHAGDLGN+  G DG AE +I D+ IPL G  SI G  +++
Sbjct:    7 VLSGSGGVSGVIHFTQEEDGPTTVTGKLSGLAPGLHGFHVHALGDTTNGCLSTGPHYNPANKEHGAPEDETRHAGDLGNVTVGEDGTAEFTIVDKQIPLIGSGSIIGRAVVV 118          
BLAST of GO241630 vs. ExPASy Swiss-Prot
Match: SODC_PAUKA (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.273e-35
Identity = 65/112 (58.04%), Postives = 82/112 (73.21%), Query Frame = 1
Query:  259 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHAGDLGNIVAGPDGVAEVSIADRMIPLTGQHSIWGXGLLL 594
            ++S +  V G+++F Q  +G T V G ++GLKPG HGFH+HALGDTTNGC STGPHFNP  K+HGAP D  RHAGDLGN+  G DG A  +I D+ IPLTG HSI G  +++
Sbjct:    7 VLSSSEGVSGTIYFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCLSTGPHFNPAGKEHGAPDDEVRHAGDLGNVTVGEDGTAAFTIVDKQIPLTGPHSIIGRAVVV 118          
The following BLAST results are available for this feature:
BLAST of GO241630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 137
Match NameE-valueIdentityDescription
SODC2_MESCR1.219e-4675.89Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum... [more]
SODC_PINSY1.764e-3762.50Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris G... [more]
SODC2_ORYSJ3.008e-3761.61Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa sub... [more]
SODC2_MAIZE8.753e-3762.16Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODC... [more]
SODC1_ORYSJ8.753e-3760.71Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC1_ORYSI8.753e-3760.71Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC5_MAIZE5.674e-3658.04Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SO... [more]
SODC4_MAIZE5.674e-3658.04Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SOD... [more]
SODC_PANGI1.651e-3558.93Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=S... [more]
SODC_PAUKA6.273e-3558.04Superoxide dismutase [Cu-Zn] OS=Paulownia kawakami... [more]

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Properties
Property NameValue
Genbank description278 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 400 5, mRNA sequence.