GO241606

Overview
NameGO241606
Unique NameGO241606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7859 contig Csv1_Contig7859:1106..1720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: PAT1_ARATH (Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 4.865e-86
Identity = 144/186 (77.42%), Postives = 169/186 (90.86%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLAKGML 558
            RVHIIDFQIGQGSQW+TLIQAFAARPGGPP IRITGIDD  SAYARGGGL IVG RL+KLA+QF VPF+F++ ++S  +V+ +NLGV+PGEA+AVNFAF+LHH+PDESVSTEN+RDRLL +VK LSPKVVTLVEQESNTNTAAF+PRF+E +NYY AMFESIDV L RDHK+RIN+EQHCLA+ ++
Sbjct:  227 RVHIIDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDMTSAYARGGGLSIVGNRLAKLAKQFNVPFEFNSVSVSVSEVKPKNLGVRPGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKSLSPKVVTLVEQESNTNTAAFFPRFMETMNYYAAMFESIDVTLPRDHKQRINVEQHCLARDVV 412          

HSP 2 Score: 37.3502 bits (85), Expect = 4.865e-86
Identity = 15/20 (75.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:  552 DVVNIIACEGPERIERHDFL 611
            DVVNIIACEG +R+ERH+ L
Sbjct:  410 DVVNIIACEGADRVERHELL 429          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SCL5_ARATH (Scarecrow-like protein 5 OS=Arabidopsis thaliana GN=SCL5 PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.177e-72
Identity = 125/182 (68.68%), Postives = 152/182 (83.52%), Query Frame = 1
Query:    4 VHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLAK 549
            VHIIDFQI QG QW++LI+A  ARPGGPP++RITGIDD  S++AR GGL +VG+RL KLAE   VPF+FH A +   +V++E LGV+ GEA+AVNF  +LHH+PDESV+ EN+RDRLL LVK LSP VVTLVEQE+NTNTA F PRF+E +N+Y A+FESIDV LARDHKERIN+EQHCLA+
Sbjct:  335 VHIIDFQISQGGQWVSLIRALGARPGGPPNVRITGIDDPRSSFARQGGLELVGQRLGKLAEMCGVPFEFHGAALCCTEVEIEKLGVRNGEALAVNFPLVLHHMPDESVTVENHRDRLLRLVKHLSPNVVTLVEQEANTNTAPFLPRFVETMNHYLAVFESIDVKLARDHKERINVEQHCLAR 516          

HSP 2 Score: 31.9574 bits (71), Expect = 1.177e-72
Identity = 13/18 (72.22%), Postives = 16/18 (88.89%), Query Frame = 3
Query:  552 DVVNIIACEGPERIERHD 605
            +VVN+IACEG ER ERH+
Sbjct:  517 EVVNLIACEGVEREERHE 534          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: CIGR2_ORYSJ (Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 1.676e-71
Identity = 126/183 (68.85%), Postives = 151/183 (82.51%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLAK 549
            R+HIIDF I QG+QWI+L+QA AARPGGPP +RITGIDDS+SAYARGGGL +VG+RLS +A   +VPF+FH   +SG  V+  +LGV PGEA+AVNF   LHH+PDESVST N+RDRLL +VK LSPKV+TLVE ESNTNTA F  RF E L+YYTA+FESID+ L RD +ERIN+EQHCLA+
Sbjct:  281 RIHIIDFHISQGAQWISLLQALAARPGGPPTVRITGIDDSVSAYARGGGLELVGRRLSHIASLCKVPFEFHPLAISGSKVEAAHLGVIPGEALAVNFTLELHHIPDESVSTANHRDRLLRMVKSLSPKVLTLVEMESNTNTAPFPQRFAETLDYYTAIFESIDLTLPRDDRERINMEQHCLAR 463          

HSP 2 Score: 30.4166 bits (67), Expect = 1.676e-71
Identity = 11/18 (61.11%), Postives = 16/18 (88.89%), Query Frame = 3
Query:  552 DVVNIIACEGPERIERHD 605
            ++VN+IACEG ER ER++
Sbjct:  464 EIVNLIACEGEERAERYE 481          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SCL21_ARATH (Scarecrow-like protein 21 OS=Arabidopsis thaliana GN=SCL21 PE=1 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 2.190e-71
Identity = 127/186 (68.28%), Postives = 150/186 (80.65%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLAKGML 558
            R+HIIDFQIGQGSQWI LIQAFAARPGG P+IRITG+ D       G  L  V KRL KLA++F VPF F+A +    +V++ENL V+ GEA+ VNFA+MLHH+PDESVS EN+RDRLL +VK LSPKVVTLVEQE NTNT+ F PRFLE L+YYTAMFESIDV L R+HKERINIEQHC+A+ ++
Sbjct:  157 RIHIIDFQIGQGSQWIALIQAFAARPGGAPNIRITGVGD-------GSVLVTVKKRLEKLAKKFDVPFRFNAVSRPSCEVEVENLDVRDGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVEQECNTNTSPFLPRFLETLSYYTAMFESIDVMLPRNHKERINIEQHCMARDVV 335          

HSP 2 Score: 38.891 bits (89), Expect = 2.190e-71
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:  552 DVVNIIACEGPERIERHDFL 611
            DVVNIIACEG ERIERH+ L
Sbjct:  333 DVVNIIACEGAERIERHELL 352          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: CIGR1_ORYSJ (Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 3.093e-67
Identity = 116/185 (62.70%), Postives = 141/185 (76.22%), Query Frame = 1
Query:    4 VHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLAKGML 558
            +HIIDFQI QG+QWITLIQA AARPGGPP +RITGIDD +S YARG GL IVGK L  ++E+F++P +F   ++    V  E L ++PGEA++VNF   LHH PDESV   N RD LL +VK LSPKV TLVEQES+TNT  F  RF E + YY+AMFESID NL RD+KERI++EQHCLAK ++
Sbjct:  309 IHIIDFQIAQGTQWITLIQALAARPGGPPRVRITGIDDPVSEYARGEGLDIVGKMLKSMSEEFKIPLEFTPLSVYATQVTKEMLEIRPGEALSVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFGETMEYYSAMFESIDANLPRDNKERISVEQHCLAKDIV 493          

HSP 2 Score: 36.965 bits (84), Expect = 3.093e-67
Identity = 14/20 (70.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:  552 DVVNIIACEGPERIERHDFL 611
            D+VNIIACEG +R+ERH+ L
Sbjct:  491 DIVNIIACEGKDRVERHELL 510          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SCL13_ARATH (Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 3.175e-66
Identity = 122/186 (65.59%), Postives = 150/186 (80.65%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLAKGML 558
            RVHIIDFQI QGSQ++ LIQ  A  PGGPP +R+TG+DDS S YARGGGL +VG+RL+ LA+   VPF+FH A MSG  VQ E+LG++PG AV VNF ++LHH+PDESVS EN+RDRLL L+K LSPK+VTLVEQESNTNT+ F  RF+E L+YYTAMFESID    RD K+RI+ EQHC+A+ ++
Sbjct:   79 RVHIIDFQIAQGSQYMFLIQELAKHPGGPPLLRVTGVDDSQSTYARGGGLSLVGERLATLAQSCGVPFEFHDAIMSGCKVQREHLGLEPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLSPKLVTLVEQESNTNTSPFLSRFVETLDYYTAMFESIDAARPRDDKQRISAEQHCVARDIV 264          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SCL1_ARATH (Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.906e-54
Identity = 99/185 (53.51%), Postives = 132/185 (71.35%), Query Frame = 1
Query:    4 VHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLAKGML 558
            VHIIDF I QG+Q++TLI++ A  PG  P +R+TGIDD  S     GGL I+G RL +LAE   V F F A       V    LG +PGE + VNFAF LHH+PDESV+T N RD LL +VK L+PK+VT+VEQ+ NTNT+ F+PRF+EA  YY+A+FES+D+ L R+ +ER+N+E+ CLA+ ++
Sbjct:  330 VHIIDFDINQGNQYMTLIRSIAELPGKRPRLRLTGIDDPESVQRSIGGLRIIGLRLEQLAEDNGVSFKFKAMPSKTSIVSPSTLGCKPGETLIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPKLVTVVEQDVNTNTSPFFPRFIEAYEYYSAVFESLDMTLPRESQERMNVERQCLARDIV 514          

HSP 2 Score: 34.2686 bits (77), Expect = 1.906e-54
Identity = 13/18 (72.22%), Postives = 17/18 (94.44%), Query Frame = 3
Query:  552 DVVNIIACEGPERIERHD 605
            D+VNI+ACEG ERIER++
Sbjct:  512 DIVNIVACEGEERIERYE 529          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: SCR_MAIZE (Protein SCARECROW OS=Zea mays GN=SCR PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.260e-30
Identity = 78/183 (42.62%), Postives = 112/183 (61.20%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFHAANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLAK 549
            RVHIID  I QG QW  L    A+RPGGPP +R+TG+  SM A      L   GKRLS  A+   +PF+F A      +V  E LGV   EAVAV++   LHH   +   +++     L L++RL+PKVVT+VEQ+  +++ +F  RF+EA++YY+A+F+S+D +   D  ER  +EQ  L++
Sbjct:  410 RVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGASMEA------LEATGKRLSDFADTLGLPFEFCAVAEKAGNVDPEKLGVTRREAVAVHW---LHHSLYDVTGSDS---NTLWLIQRLAPKVVTMVEQDL-SHSGSFLARFVEAIHYYSALFDSLDASYGEDSPERHVVEQQLLSR 579          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: GAI1_VITVI (DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.399e-30
Identity = 69/165 (41.82%), Postives = 99/165 (60.00%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFH--AANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESID 489
            RVH+IDF + QG QW  L+QA A RPGGPP  R+TGI    +       L  VG +L++LAE   V F++    AN S  D+    L ++ GE+VAVN  F LH +    ++     +R+L  VK + P +VT+VEQE+N N   F  RF E+L+YY+ +F+S++
Sbjct:  314 RVHVIDFSMKQGMQWPALMQALALRPGGPPSFRLTGIGPPST--DNTDHLHEVGWKLAQLAETIHVEFEYRGFVAN-SLADLDASMLELRDGESVAVNSVFELHSL----LARPGGIERVLSAVKDMKPDIVTIVEQEANHNGPVFLDRFTESLHYYSTLFDSLE 471          

HSP 2 Score: 36.965 bits (84), Expect = 3.399e-30
Identity = 13/20 (65.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:  555 VVNIIACEGPERIERHDFLA 614
            + N++ACEGPER+ERH+ LA
Sbjct:  494 ICNVVACEGPERVERHETLA 513          
BLAST of GO241606 vs. ExPASy Swiss-Prot
Match: GAI_SOLLC (DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.764e-30
Identity = 68/166 (40.96%), Postives = 100/166 (60.24%), Query Frame = 1
Query:    1 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAYARGGGLGIVGKRLSKLAEQFRVPFDFH---AANMSGYDVQLENLGVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESID 489
            +VH+IDF + QG QW  L+QA A RPGGPP  R+TGI            L  VG +L++LAE   V F+F    A +++  D  + ++     EAVA+N  F LH +    +S     +++L  +K+++PK+VTLVEQE+N N   F  RF EAL+YY+ MF+S++
Sbjct:  299 KVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNT--DALQQVGWKLAQLAETIGVEFEFRGFVANSLADLDATILDIRPSETEAVAINSVFELHRL----LSRPGAIEKVLNSIKQINPKIVTLVEQEANHNAGVFIDRFNEALHYYSTMFDSLE 458          

HSP 2 Score: 31.187 bits (69), Expect = 5.764e-30
Identity = 10/19 (52.63%), Postives = 16/19 (84.21%), Query Frame = 3
Query:  555 VVNIIACEGPERIERHDFL 611
            + N++ACEG +R+ERH+ L
Sbjct:  493 ICNVVACEGSDRVERHETL 511          
The following BLAST results are available for this feature:
BLAST of GO241606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
PAT1_ARATH4.865e-8677.42Scarecrow-like transcription factor PAT1 OS=Arabid... [more]
SCL5_ARATH1.177e-7268.68Scarecrow-like protein 5 OS=Arabidopsis thaliana G... [more]
CIGR2_ORYSJ1.676e-7168.85Chitin-inducible gibberellin-responsive protein 2 ... [more]
SCL21_ARATH2.190e-7168.28Scarecrow-like protein 21 OS=Arabidopsis thaliana ... [more]
CIGR1_ORYSJ3.093e-6762.70Chitin-inducible gibberellin-responsive protein 1 ... [more]
SCL13_ARATH3.175e-6665.59Scarecrow-like protein 13 OS=Arabidopsis thaliana ... [more]
SCL1_ARATH1.906e-5453.51Scarecrow-like protein 1 OS=Arabidopsis thaliana G... [more]
SCR_MAIZE1.260e-3042.62Protein SCARECROW OS=Zea mays GN=SCR PE=2 SV=1[more]
GAI1_VITVI3.399e-3041.82DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 ... [more]
GAI_SOLLC5.764e-3040.96DELLA protein GAI OS=Solanum lycopersicum GN=GAI P... [more]

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Properties
Property NameValue
Genbank description254 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 376 5, mRNA sequence.