GO241602

Overview
NameGO241602
Unique NameGO241602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241602 vs. ExPASy Swiss-Prot
Match: SBP3_ARATH (Probable steroid-binding protein 3 OS=Arabidopsis thaliana GN=MP3 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.321e-31
Identity = 54/62 (87.10%), Postives = 55/62 (88.71%), Query Frame = 2
Query:   83 MEFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKN 268
            MEFT  QL QYNGTD SKPIYVAIKGRVFDVTTGKSFYG GG Y+MFAGKDASRAL KMSKN
Sbjct:    1 MEFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKN 62          

HSP 2 Score: 46.9802 bits (110), Expect = 1.321e-31
Identity = 19/31 (61.29%), Postives = 27/31 (87.10%), Query Frame = 3
Query:  261 ARMDDDVTPSLDGLTEKEMGVLSDWEKKFEA 353
            ++ ++DV+PSL+GLTEKE+  L+DWE KFEA
Sbjct:   60 SKNEEDVSPSLEGLTEKEINTLNDWETKFEA 90          
BLAST of GO241602 vs. ExPASy Swiss-Prot
Match: MSBP1_ARATH (Membrane steroid-binding protein 1 OS=Arabidopsis thaliana GN=MSBP1 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.154e-17
Identity = 38/59 (64.41%), Postives = 48/59 (81.36%), Query Frame = 2
Query:   86 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMS 262
            E T  +L QY+G+DP KP+ +AIK +++DVT  + FYGPGG YA+FAGKDASRALAKMS
Sbjct:   74 EITEEELKQYDGSDPQKPLLMAIKHQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMS 132          

HSP 2 Score: 25.7942 bits (55), Expect = 1.154e-17
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 3
Query:  270 DDDVTPSLDGLTEKEMGVLSDWEKKF 347
            + D+T  + GL   E+  L DWE KF
Sbjct:  135 EKDLTWDVSGLGPFELDALQDWEYKF 160          
BLAST of GO241602 vs. ExPASy Swiss-Prot
Match: MSBP2_ARATH (Membrane steroid-binding protein 2 OS=Arabidopsis thaliana GN=MSBP2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.293e-17
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = 2
Query:   86 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMS 262
            E T  +L  Y+G+D  KP+ +AIKG+++DV+  + FYGPGG YA+FAGKDASRALAKMS
Sbjct:   70 EITEEELKLYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMS 128          

HSP 2 Score: 28.4906 bits (62), Expect = 3.293e-17
Identity = 12/26 (46.15%), Postives = 15/26 (57.69%), Query Frame = 3
Query:  270 DDDVTPSLDGLTEKEMGVLSDWEKKF 347
            D D+T  + GL   E+  L DWE KF
Sbjct:  131 DQDLTGDISGLGAFELEALQDWEYKF 156          
BLAST of GO241602 vs. ExPASy Swiss-Prot
Match: NENF_RAT (Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.212e-13
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 2
Query:   89 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMS 262
            FT  +L +Y+G +  +PIY+A+KG VFDVT+GK FYG G  Y   AGKD+SR +AKMS
Sbjct:   46 FTEEELARYSGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMS 103          

HSP 2 Score: 22.3274 bits (46), Expect = 3.212e-13
Identity = 9/19 (47.37%), Postives = 12/19 (63.16%), Query Frame = 3
Query:  276 DVTPSLDGLTEKEMGVLSD 332
            D+T  + GLT KE+  L D
Sbjct:  108 DLTHDISGLTAKELEALDD 126          
BLAST of GO241602 vs. ExPASy Swiss-Prot
Match: NENF_MOUSE (Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.188e-12
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 2
Query:   89 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMS 262
            FT  +L +Y G +  +PIY+A+KG VFDVT+GK FYG G  Y   AGKD+SR +AKMS
Sbjct:   46 FTEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMS 103          

HSP 2 Score: 20.7866 bits (42), Expect = 1.188e-12
Identity = 9/19 (47.37%), Postives = 11/19 (57.89%), Query Frame = 3
Query:  276 DVTPSLDGLTEKEMGVLSD 332
            D+T    GLT KE+  L D
Sbjct:  108 DLTHDTTGLTAKELEALDD 126          
BLAST of GO241602 vs. ExPASy Swiss-Prot
Match: DAP1_SCHPO (Cytochrome P450 regulator dap1 OS=Schizosaccharomyces pombe GN=dap1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.124e-12
Identity = 40/94 (42.55%), Postives = 57/94 (60.64%), Query Frame = 2
Query:    2 IFLTSLPLLSVRTATNQTRRSSFVHSS-------MEFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMS 262
            +F+ +L L  + T   +    SF+ S         ++TPA+L +YNG+  S  +++AIKG V++VT G  FYGP G Y+ FAG DASR LAK S
Sbjct:    7 VFIVTLFLYLLITRWRRKNEKSFIASEEPKQPEWRDYTPAELKEYNGSKNSL-VFLAIKGTVYNVTMGSKFYGPQGPYSAFAGHDASRGLAKNS 99          
BLAST of GO241602 vs. ExPASy Swiss-Prot
Match: PGRC1_PONAB (Membrane-associated progesterone receptor component 1 OS=Pongo abelii GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 7.352e-12
Identity = 31/56 (55.36%), Postives = 42/56 (75.00%), Query Frame = 2
Query:   86 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALA 253
            +FTPA+L +++G    + I +AI G+VFDVT G+ FYGP G Y +FAG+DASR LA
Sbjct:   72 DFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLA 126          

HSP 2 Score: 24.2534 bits (51), Expect = 7.352e-12
Identity = 11/29 (37.93%), Postives = 13/29 (44.83%), Query Frame = 3
Query:  276 DVTPSLDGLTEKEMGVLSDWEKKFEASTH 362
            D    L  LT  +   LSDWE +F    H
Sbjct:  137 DEYDDLSDLTAAQQETLSDWESQFTFKYH 165          
BLAST of GO241602 vs. ExPASy Swiss-Prot
Match: PGRC1_HUMAN (Membrane-associated progesterone receptor component 1 OS=Homo sapiens GN=PGRMC1 PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 7.352e-12
Identity = 31/56 (55.36%), Postives = 42/56 (75.00%), Query Frame = 2
Query:   86 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALA 253
            +FTPA+L +++G    + I +AI G+VFDVT G+ FYGP G Y +FAG+DASR LA
Sbjct:   72 DFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLA 126          

HSP 2 Score: 24.2534 bits (51), Expect = 7.352e-12
Identity = 11/29 (37.93%), Postives = 13/29 (44.83%), Query Frame = 3
Query:  276 DVTPSLDGLTEKEMGVLSDWEKKFEASTH 362
            D    L  LT  +   LSDWE +F    H
Sbjct:  137 DEYDDLSDLTAAQQETLSDWESQFTFKYH 165          
BLAST of GO241602 vs. ExPASy Swiss-Prot
Match: NENF_HUMAN (Neudesin OS=Homo sapiens GN=NENF PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.187e-11
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 2
Query:   89 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMS 262
            FT  +L +Y G +  +PIY+A+KG VFDVT+GK FYG G  Y    GKD++R +AKMS
Sbjct:   47 FTEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMS 104          
BLAST of GO241602 vs. ExPASy Swiss-Prot
Match: NENF_BOVIN (Neudesin OS=Bos taurus GN=NENF PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.187e-11
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 2
Query:   89 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMS 262
            FT  +L +Y G +  +PIY+A+KG VFDVT+GK FYG G  Y    GKD++R +AKMS
Sbjct:   44 FTEEELARYGGEEEDQPIYMAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMS 101          
The following BLAST results are available for this feature:
BLAST of GO241602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
SBP3_ARATH1.321e-3187.10Probable steroid-binding protein 3 OS=Arabidopsis ... [more]
MSBP1_ARATH1.154e-1764.41Membrane steroid-binding protein 1 OS=Arabidopsis ... [more]
MSBP2_ARATH3.293e-1761.02Membrane steroid-binding protein 2 OS=Arabidopsis ... [more]
NENF_RAT3.212e-1356.90Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1[more]
NENF_MOUSE1.188e-1256.90Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1[more]
DAP1_SCHPO3.124e-1242.55Cytochrome P450 regulator dap1 OS=Schizosaccharomy... [more]
PGRC1_PONAB7.352e-1255.36Membrane-associated progesterone receptor componen... [more]
PGRC1_HUMAN7.352e-1255.36Membrane-associated progesterone receptor componen... [more]
NENF_HUMAN1.187e-1153.45Neudesin OS=Homo sapiens GN=NENF PE=1 SV=1[more]
NENF_BOVIN1.187e-1153.45Neudesin OS=Bos taurus GN=NENF PE=2 SV=1[more]

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Properties
Property NameValue
Genbank description250 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 371 5, mRNA sequence.