GO241591 | Citrus Genome Database

Overview


Name	GO241591
Unique Name	GO241591
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	1

Libraries


Library Name	Type
Cara cara navel orange fruit cDNA library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig2799	contig	Csv1_Contig2799:1..603.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of GO241591 vs. ExPASy Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 270.396 bits (690), Expect = 1.556e-73
Identity = 128/137 (93.43%), Postives = 135/137 (98.54%), Query Frame = 2

Query:   95 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKEL 505
            MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIK+RPCKV+EVSTSKTGKHGHAKCHFVGIDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTE GNTKDDLRLPTDE LL+Q+KDGFAEGK+L
Sbjct:    1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVMEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDL 137

HSP 2 Score: 25.0238 bits (53), Expect = 1.556e-73
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 1

Query:  541 QICALKDIGPKS 576
            +IC+LKDIGPK+
Sbjct:  149 RICSLKDIGPKN 160

HSP 3 Score: 23.483 bits (49), Expect = 1.556e-73
Identity = 9/14 (64.29%), Postives = 14/14 (100.00%), Query Frame = 3

Query:  495 GRNLVLTVMSSMGE 536
            G++LV++VMS+MGE
Sbjct:  134 GKDLVVSVMSAMGE 147

[Close]

BLAST of GO241591 vs. ExPASy Swiss-Prot
Match: IF5A5_SOLTU (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.557e-73
Identity = 128/137 (93.43%), Postives = 135/137 (98.54%), Query Frame = 2

Query:   95 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKEL 505
            MSDEEHHFESKADAGASKTYPQQAGTIRK+G+IVIK+RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+TLL Q+KDGFAEGK+L
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKSGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDL 137

HSP 2 Score: 25.0238 bits (53), Expect = 1.557e-73
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 1

Query:  541 QICALKDIGPK 573
            QIC +KDIGPK
Sbjct:  149 QICGIKDIGPK 159

HSP 3 Score: 24.6386 bits (52), Expect = 1.557e-73
Identity = 10/14 (71.43%), Postives = 14/14 (100.00%), Query Frame = 3

Query:  495 GRNLVLTVMSSMGE 536
            G++LVL+VMS+MGE
Sbjct:  134 GKDLVLSVMSAMGE 147

[Close]

BLAST of GO241591 vs. ExPASy Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 1.557e-73
Identity = 128/137 (93.43%), Postives = 133/137 (97.08%), Query Frame = 2

Query:   95 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKEL 505
            MSDEEH FESKADAGASKTYPQQAGTIRKNG+IVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LLTQ+KDGFAEGK+L
Sbjct:    1 MSDEEHQFESKADAGASKTYPQQAGTIRKNGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQIKDGFAEGKDL 137

HSP 2 Score: 27.335 bits (59), Expect = 1.557e-73
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1

Query:  541 QICALKDIGPK 573
            QICALKDIGPK
Sbjct:  149 QICALKDIGPK 159

HSP 3 Score: 23.483 bits (49), Expect = 1.557e-73
Identity = 9/14 (64.29%), Postives = 14/14 (100.00%), Query Frame = 3

Query:  495 GRNLVLTVMSSMGE 536
            G++LV++VMS+MGE
Sbjct:  134 GKDLVVSVMSAMGE 147

[Close]

BLAST of GO241591 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLLC (Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.028e-73
Identity = 128/137 (93.43%), Postives = 134/137 (97.81%), Query Frame = 2

Query:   95 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKEL 505
            MSDEEHHFESKADAGASKTYPQQAGTIRK G+IVIK+RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+TLL Q+KDGFAEGK+L
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDL 137

HSP 2 Score: 25.0238 bits (53), Expect = 2.028e-73
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 1

Query:  541 QICALKDIGPK 573
            QIC +KDIGPK
Sbjct:  149 QICGIKDIGPK 159

HSP 3 Score: 24.6386 bits (52), Expect = 2.028e-73
Identity = 10/14 (71.43%), Postives = 14/14 (100.00%), Query Frame = 3

Query:  495 GRNLVLTVMSSMGE 536
            G++LVL+VMS+MGE
Sbjct:  134 GKDLVLSVMSAMGE 147

[Close]

BLAST of GO241591 vs. ExPASy Swiss-Prot
Match: IF5A1_TOBAC (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 9.899e-73
Identity = 127/137 (92.70%), Postives = 133/137 (97.08%), Query Frame = 2

Query:   95 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKEL 505
            MSDEEHHFESKADAGASKTYPQQAGTIRKNG+IVIK+RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL  +KDGFAEGK+L
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDL 137

HSP 2 Score: 24.6386 bits (52), Expect = 9.899e-73
Identity = 10/14 (71.43%), Postives = 14/14 (100.00%), Query Frame = 3

Query:  495 GRNLVLTVMSSMGE 536
            G++LVL+VMS+MGE
Sbjct:  134 GKDLVLSVMSAMGE 147

HSP 3 Score: 24.6386 bits (52), Expect = 9.899e-73
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 1

Query:  541 QICALKDIGPK 573
            QIC +KD+GPK
Sbjct:  149 QICGIKDVGPK 159

[Close]

BLAST of GO241591 vs. ExPASy Swiss-Prot
Match: IF5A1_NICPL (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 9.899e-73
Identity = 127/137 (92.70%), Postives = 133/137 (97.08%), Query Frame = 2

Query:   95 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKEL 505
            MSDEEHHFESKADAGASKTYPQQAGTIRKNG+IVIK+RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL  +KDGFAEGK+L
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDL 137

HSP 2 Score: 24.6386 bits (52), Expect = 9.899e-73
Identity = 10/14 (71.43%), Postives = 14/14 (100.00%), Query Frame = 3

Query:  495 GRNLVLTVMSSMGE 536
            G++LVL+VMS+MGE
Sbjct:  134 GKDLVLSVMSAMGE 147

HSP 3 Score: 24.6386 bits (52), Expect = 9.899e-73
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 1

Query:  541 QICALKDIGPK 573
            QIC +KD+GPK
Sbjct:  149 QICGIKDVGPK 159

[Close]

BLAST of GO241591 vs. ExPASy Swiss-Prot
Match: IF5A2_MEDSA (Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 9.899e-73
Identity = 125/137 (91.24%), Postives = 134/137 (97.81%), Query Frame = 2

Query:   95 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKEL 505
            MSDEEHHFE  ADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NG+TKDDL+LPTD++LLTQ+KDGFA+GK+L
Sbjct:    1 MSDEEHHFEPAADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDDSLLTQIKDGFADGKDL 137

HSP 2 Score: 27.335 bits (59), Expect = 9.899e-73
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1

Query:  541 QICALKDIGPK 573
            QICALKDIGPK
Sbjct:  149 QICALKDIGPK 159

HSP 3 Score: 23.483 bits (49), Expect = 9.899e-73
Identity = 9/14 (64.29%), Postives = 14/14 (100.00%), Query Frame = 3

Query:  495 GRNLVLTVMSSMGE 536
            G++LV++VMS+MGE
Sbjct:  134 GKDLVVSVMSAMGE 147

[Close]

BLAST of GO241591 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLLC (Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 4.829e-72
Identity = 127/137 (92.70%), Postives = 131/137 (95.62%), Query Frame = 2

Query:   95 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKEL 505
            MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+ KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+TLL Q+K GF EGK+L
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLNQVKGGFEEGKDL 137

HSP 2 Score: 24.6386 bits (52), Expect = 4.829e-72
Identity = 10/14 (71.43%), Postives = 14/14 (100.00%), Query Frame = 3

Query:  495 GRNLVLTVMSSMGE 536
            G++LVL+VMS+MGE
Sbjct:  134 GKDLVLSVMSAMGE 147

HSP 3 Score: 23.483 bits (49), Expect = 4.829e-72
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 1

Query:  541 QICALKDIGPKS 576
            QICA+KDIG K+
Sbjct:  149 QICAVKDIGTKT 160

[Close]

BLAST of GO241591 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLTU (Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum GN=EIF5A1 PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 6.290e-72
Identity = 126/137 (91.97%), Postives = 131/137 (95.62%), Query Frame = 2

Query:   95 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKEL 505
            MSDEEHHFESKADAGASKTYPQQAGTIRK+GYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL Q+K GF EGK+L
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDALLNQVKGGFEEGKDL 137

HSP 2 Score: 24.6386 bits (52), Expect = 6.290e-72
Identity = 10/14 (71.43%), Postives = 14/14 (100.00%), Query Frame = 3

Query:  495 GRNLVLTVMSSMGE 536
            G++LVL+VMS+MGE
Sbjct:  134 GKDLVLSVMSAMGE 147

HSP 3 Score: 24.6386 bits (52), Expect = 6.290e-72
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1

Query:  541 QICALKDIGPKS 576
            QICA+KDIG KS
Sbjct:  149 QICAVKDIGTKS 160

[Close]

BLAST of GO241591 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLTU (Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 1.019e-71
Identity = 128/137 (93.43%), Postives = 133/137 (97.08%), Query Frame = 2

Query:   95 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKEL 505
            MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTE+GNTKDDLRLPTDE+LL Q+KDGF EGK+L
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDESLLKQVKDGFQEGKDL 137

HSP 2 Score: 23.483 bits (49), Expect = 1.019e-71
Identity = 9/14 (64.29%), Postives = 14/14 (100.00%), Query Frame = 3

Query:  495 GRNLVLTVMSSMGE 536
            G++LV++VMS+MGE
Sbjct:  134 GKDLVVSVMSAMGE 147

The following BLAST results are available for this feature:

BLAST of GO241591 vs. ExPASy Swiss-Prot

BLAST of GO241591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53


Match Name	E-value	Identity	Description
IF5A_MANES	1.556e-73	93.43	Eukaryotic translation initiation factor 5A OS=Man...	[more]
IF5A5_SOLTU	1.557e-73	93.43	Eukaryotic translation initiation factor 5A-5 OS=S...	[more]
IF5A2_NICPL	1.557e-73	93.43	Eukaryotic translation initiation factor 5A-2 OS=N...	[more]
IF5A1_SOLLC	2.028e-73	93.43	Eukaryotic translation initiation factor 5A-1 OS=S...	[more]
IF5A1_TOBAC	9.899e-73	92.70	Eukaryotic translation initiation factor 5A-1 OS=N...	[more]
IF5A1_NICPL	9.899e-73	92.70	Eukaryotic translation initiation factor 5A-1 OS=N...	[more]
IF5A2_MEDSA	9.899e-73	91.24	Eukaryotic translation initiation factor 5A-2 OS=M...	[more]
IF5A4_SOLLC	4.829e-72	92.70	Eukaryotic translation initiation factor 5A-4 OS=S...	[more]
IF5A1_SOLTU	6.290e-72	91.97	Eukaryotic translation initiation factor 5A-1/2 OS...	[more]
IF5A3_SOLTU	1.019e-71	93.43	Eukaryotic translation initiation factor 5A-3 OS=S...	[more]

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Properties


Property Name	Value
Genbank description	239 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 358 5, mRNA sequence.