GO241588 | Citrus Genome Database

Overview


Name	GO241588
Unique Name	GO241588
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	1

Libraries


Library Name	Type
Cara cara navel orange fruit cDNA library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig13137	contig	Csv1_Contig13137:39..641.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of GO241588 vs. ExPASy Swiss-Prot
Match: VATL4_ARATH (V-type proton ATPase 16 kDa proteolipid subunit c4 OS=Arabidopsis thaliana GN=VHA-C4 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.171e-41
Identity = 85/132 (64.39%), Postives = 90/132 (68.18%), Query Frame = 1

Query:  109 MSSTLFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVXXCWCQSQCSTAEAF 504
            M+S+ FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIV     ++     + F
Sbjct:    1 MASSGFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLF 132

HSP 2 Score: 36.965 bits (84), Expect = 1.171e-41
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 3

Query:  552 YGLIVGIILSSRAGQSRA 605
            YGLIVGIILSSRAGQSRA
Sbjct:  148 YGLIVGIILSSRAGQSRA 165

[Close]

BLAST of GO241588 vs. ExPASy Swiss-Prot
Match: VATL_MESCR (V-type proton ATPase 16 kDa proteolipid subunit OS=Mesembryanthemum crystallinum GN=VMAC1 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.172e-41
Identity = 84/130 (64.62%), Postives = 89/130 (68.46%), Query Frame = 1

Query:  115 STLFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVXXCWCQSQCSTAEAF 504
            ST+F+GDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIV     ++     + F
Sbjct:    2 STVFNGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLF 131

HSP 2 Score: 36.965 bits (84), Expect = 1.172e-41
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 3

Query:  552 YGLIVGIILSSRAGQSRA 605
            YGLIVGIILSSRAGQSRA
Sbjct:  147 YGLIVGIILSSRAGQSRA 164

[Close]

BLAST of GO241588 vs. ExPASy Swiss-Prot
Match: VATL_BETVU (V-type proton ATPase 16 kDa proteolipid subunit OS=Beta vulgaris GN=VMAC1 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.172e-41
Identity = 84/130 (64.62%), Postives = 89/130 (68.46%), Query Frame = 1

Query:  115 STLFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVXXCWCQSQCSTAEAF 504
            ST+F+GDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIV     ++     + F
Sbjct:    2 STVFNGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLF 131

HSP 2 Score: 36.965 bits (84), Expect = 1.172e-41
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 3

Query:  552 YGLIVGIILSSRAGQSRA 605
            YGLIVGIILSSRAGQSRA
Sbjct:  147 YGLIVGIILSSRAGQSRA 164

[Close]

BLAST of GO241588 vs. ExPASy Swiss-Prot
Match: VATL_KALDA (V-type proton ATPase 16 kDa proteolipid subunit OS=Kalanchoe daigremontiana PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.527e-41
Identity = 87/132 (65.91%), Postives = 90/132 (68.18%), Query Frame = 1

Query:  109 MSSTLFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVXXCWCQSQCSTAEAF 504
            MSST FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIV     ++     + F
Sbjct:    1 MSST-FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLF 131

HSP 2 Score: 36.965 bits (84), Expect = 1.527e-41
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 3

Query:  552 YGLIVGIILSSRAGQSRA 605
            YGLIVGIILSSRAGQSRA
Sbjct:  147 YGLIVGIILSSRAGQSRA 164

[Close]

BLAST of GO241588 vs. ExPASy Swiss-Prot
Match: VATL_GOSHI (V-type proton ATPase 16 kDa proteolipid subunit OS=Gossypium hirsutum GN=CVA16-2 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.527e-41
Identity = 87/132 (65.91%), Postives = 90/132 (68.18%), Query Frame = 1

Query:  109 MSSTLFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVXXCWCQSQCSTAEAF 504
            MSST FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIV     ++     + F
Sbjct:    1 MSST-FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLF 131

HSP 2 Score: 36.965 bits (84), Expect = 1.527e-41
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 3

Query:  552 YGLIVGIILSSRAGQSRA 605
            YGLIVGIILSSRAGQSRA
Sbjct:  147 YGLIVGIILSSRAGQSRA 164

[Close]

BLAST of GO241588 vs. ExPASy Swiss-Prot
Match: VATL2_ARATH (V-type proton ATPase 16 kDa proteolipid subunit c2 OS=Arabidopsis thaliana GN=VHA-C2 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.379e-41
Identity = 86/132 (65.15%), Postives = 90/132 (68.18%), Query Frame = 1

Query:  109 MSSTLFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVXXCWCQSQCSTAEAF 504
            M+ST FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIV     ++     + F
Sbjct:    1 MAST-FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLF 131

HSP 2 Score: 36.965 bits (84), Expect = 3.379e-41
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 3

Query:  552 YGLIVGIILSSRAGQSRA 605
            YGLIVGIILSSRAGQSRA
Sbjct:  147 YGLIVGIILSSRAGQSRA 164

[Close]

BLAST of GO241588 vs. ExPASy Swiss-Prot
Match: VATL_ORYSJ (V-type proton ATPase 16 kDa proteolipid subunit OS=Oryza sativa subsp. japonica GN=VATP-P1 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.737e-41
Identity = 83/130 (63.85%), Postives = 88/130 (67.69%), Query Frame = 1

Query:  115 STLFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVXXCWCQSQCSTAEAF 504
            S++FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAK YYLFDGY                 MAIGIV     ++     + F
Sbjct:    2 SSVFSGDETAPFFGFLGAASALIFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLF 131

HSP 2 Score: 36.965 bits (84), Expect = 5.737e-41
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 3

Query:  552 YGLIVGIILSSRAGQSRA 605
            YGLIVGIILSSRAGQSRA
Sbjct:  147 YGLIVGIILSSRAGQSRA 164

[Close]

BLAST of GO241588 vs. ExPASy Swiss-Prot
Match: VATL_ORYSI (V-type proton ATPase 16 kDa proteolipid subunit OS=Oryza sativa subsp. indica GN=VATP-P1 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.737e-41
Identity = 83/130 (63.85%), Postives = 88/130 (67.69%), Query Frame = 1

Query:  115 STLFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVXXCWCQSQCSTAEAF 504
            S++FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAK YYLFDGY                 MAIGIV     ++     + F
Sbjct:    2 SSVFSGDETAPFFGFLGAASALIFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLF 131

HSP 2 Score: 36.965 bits (84), Expect = 5.737e-41
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 3

Query:  552 YGLIVGIILSSRAGQSRA 605
            YGLIVGIILSSRAGQSRA
Sbjct:  147 YGLIVGIILSSRAGQSRA 164

[Close]

BLAST of GO241588 vs. ExPASy Swiss-Prot
Match: VATL_PHAAU (V-type proton ATPase 16 kDa proteolipid subunit OS=Phaseolus aureus PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 7.475e-41
Identity = 83/127 (65.35%), Postives = 86/127 (67.72%), Query Frame = 1

Query:  124 FSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVXXCWCQSQCSTAEAF 504
            FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIV     ++     + F
Sbjct:    4 FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLF 130

HSP 2 Score: 36.965 bits (84), Expect = 7.475e-41
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 3

Query:  552 YGLIVGIILSSRAGQSRA 605
            YGLIVGIILSSRAGQSRA
Sbjct:  146 YGLIVGIILSSRAGQSRA 163

[Close]

BLAST of GO241588 vs. ExPASy Swiss-Prot
Match: VATL1_ARATH (V-type proton ATPase 16 kDa proteolipid subunit c1/c3/c5 OS=Arabidopsis thaliana GN=VHA-C1 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 7.475e-41
Identity = 83/127 (65.35%), Postives = 86/127 (67.72%), Query Frame = 1

Query:  124 FSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVXXCWCQSQCSTAEAF 504
            FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIV     ++     + F
Sbjct:    4 FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLF 130

HSP 2 Score: 36.965 bits (84), Expect = 7.475e-41
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 3

Query:  552 YGLIVGIILSSRAGQSRA 605
            YGLIVGIILSSRAGQSRA
Sbjct:  146 YGLIVGIILSSRAGQSRA 163

The following BLAST results are available for this feature:

BLAST of GO241588 vs. ExPASy Swiss-Prot

BLAST of GO241588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44


Match Name	E-value	Identity	Description
VATL4_ARATH	1.171e-41	64.39	V-type proton ATPase 16 kDa proteolipid subunit c4...	[more]
VATL_MESCR	1.172e-41	64.62	V-type proton ATPase 16 kDa proteolipid subunit OS...	[more]
VATL_BETVU	1.172e-41	64.62	V-type proton ATPase 16 kDa proteolipid subunit OS...	[more]
VATL_KALDA	1.527e-41	65.91	V-type proton ATPase 16 kDa proteolipid subunit OS...	[more]
VATL_GOSHI	1.527e-41	65.91	V-type proton ATPase 16 kDa proteolipid subunit OS...	[more]
VATL2_ARATH	3.379e-41	65.15	V-type proton ATPase 16 kDa proteolipid subunit c2...	[more]
VATL_ORYSJ	5.737e-41	63.85	V-type proton ATPase 16 kDa proteolipid subunit OS...	[more]
VATL_ORYSI	5.737e-41	63.85	V-type proton ATPase 16 kDa proteolipid subunit OS...	[more]
VATL_PHAAU	7.475e-41	65.35	V-type proton ATPase 16 kDa proteolipid subunit OS...	[more]
VATL1_ARATH	7.475e-41	65.35	V-type proton ATPase 16 kDa proteolipid subunit c1...	[more]

Pages

Properties


Property Name	Value
Genbank description	236 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 355 5, mRNA sequence.