GO241565 | Citrus Genome Database

Overview


Name	GO241565
Unique Name	GO241565
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	1

Libraries


Library Name	Type
Cara cara navel orange fruit cDNA library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1827	contig	Csv1_Contig1827:103..717.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of GO241565 vs. ExPASy Swiss-Prot
Match: IF1A_ONOVI (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 3.676e-47
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 3

Query:  129 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKK 281
            EADD+KRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKK
Sbjct:   18 EADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKK 68

HSP 2 Score: 99.7525 bits (247), Expect = 3.676e-47
Identity = 48/54 (88.89%), Postives = 51/54 (94.44%), Query Frame = 1

Query:  265 GRCTKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 426
            G+  KKVWIAAGDIILVGLRDYQDDKADVILK MPDEARLLKAYGELP++TRLN
Sbjct:   63 GKMHKKVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLN 116

[Close]

BLAST of GO241565 vs. ExPASy Swiss-Prot
Match: IF1A_WHEAT (Eukaryotic translation initiation factor 1A OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.320e-45
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 3

Query:  129 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKK 281
            EADD+KRELVFKEDGQEYAQV RMLGNGRCEA+C+DGTKRLCHIRGKMHKK
Sbjct:   18 EADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCHIRGKMHKK 68

HSP 2 Score: 97.0561 bits (240), Expect = 3.320e-45
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 1

Query:  265 GRCTKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 426
            G+  KKVWIAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELP++ RLN
Sbjct:   63 GKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLN 116

[Close]

BLAST of GO241565 vs. ExPASy Swiss-Prot
Match: IF1AX_PONAB (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EIF1AX PE=2 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 8.176e-37
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 3

Query:  129 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKK 281
            E + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KK
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKK 68

HSP 2 Score: 83.5741 bits (205), Expect = 8.176e-37
Identity = 40/54 (74.07%), Postives = 44/54 (81.48%), Query Frame = 1

Query:  265 GRCTKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 426
            G+  KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   63 GKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116

[Close]

BLAST of GO241565 vs. ExPASy Swiss-Prot
Match: IF1AX_MOUSE (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus GN=Eif1ay PE=2 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 8.176e-37
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 3

Query:  129 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKK 281
            E + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KK
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKK 68

HSP 2 Score: 83.5741 bits (205), Expect = 8.176e-37
Identity = 40/54 (74.07%), Postives = 44/54 (81.48%), Query Frame = 1

Query:  265 GRCTKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 426
            G+  KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   63 GKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116

[Close]

BLAST of GO241565 vs. ExPASy Swiss-Prot
Match: IF1AX_HUMAN (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 8.176e-37
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 3

Query:  129 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKK 281
            E + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KK
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKK 68

HSP 2 Score: 83.5741 bits (205), Expect = 8.176e-37
Identity = 40/54 (74.07%), Postives = 44/54 (81.48%), Query Frame = 1

Query:  265 GRCTKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 426
            G+  KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   63 GKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116

[Close]

BLAST of GO241565 vs. ExPASy Swiss-Prot
Match: IF1AY_PANTR (Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Pan troglodytes GN=EIF1AY PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.808e-36
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 3

Query:  129 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKK 281
            E + EKRELVFKEDGQEYAQV++MLGNGR EA+C DG KRLCHIRGK+ KK
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRKK 68

HSP 2 Score: 83.5741 bits (205), Expect = 1.808e-36
Identity = 40/54 (74.07%), Postives = 44/54 (81.48%), Query Frame = 1

Query:  265 GRCTKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 426
            G+  KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   63 GKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116

[Close]

BLAST of GO241565 vs. ExPASy Swiss-Prot
Match: IF1AY_HUMAN (Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Homo sapiens GN=EIF1AY PE=1 SV=4)

HSP 1 Score: 89.7373 bits (221), Expect = 1.808e-36
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 3

Query:  129 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKK 281
            E + EKRELVFKEDGQEYAQV++MLGNGR EA+C DG KRLCHIRGK+ KK
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRKK 68

HSP 2 Score: 83.5741 bits (205), Expect = 1.808e-36
Identity = 40/54 (74.07%), Postives = 44/54 (81.48%), Query Frame = 1

Query:  265 GRCTKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 426
            G+  KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   63 GKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116

[Close]

BLAST of GO241565 vs. ExPASy Swiss-Prot
Match: IF1A_RAT (Eukaryotic translation initiation factor 1A OS=Rattus norvegicus GN=Eif1a PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 2.355e-36
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 3

Query:  129 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKK 281
            E + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG +RLCHIRGK+ KK
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVRRLCHIRGKLRKK 68

HSP 2 Score: 83.1889 bits (204), Expect = 2.355e-36
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 1

Query:  265 GRCTKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 426
            G+  KKVWI   DIIL+GLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   63 GKLRKKVWINTSDIILIGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116

[Close]

BLAST of GO241565 vs. ExPASy Swiss-Prot
Match: IF1A_MOUSE (Eukaryotic translation initiation factor 1A OS=Mus musculus GN=Eif1a PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 2.355e-36
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 3

Query:  129 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKK 281
            E + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG +RLCHIRGK+ KK
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVRRLCHIRGKLRKK 68

HSP 2 Score: 83.1889 bits (204), Expect = 2.355e-36
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 1

Query:  265 GRCTKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 426
            G+  KKVWI   DIIL+GLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   63 GKLRKKVWINTSDIILIGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116

[Close]

BLAST of GO241565 vs. ExPASy Swiss-Prot
Match: IF1A_RABIT (Eukaryotic translation initiation factor 1A OS=Oryctolagus cuniculus GN=EIF1A PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 6.069e-34
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 3

Query:  129 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKK 281
            E + EKRELVFKEDGQEYAQV++MLGNGR EAM  DG KRL HIRGK+ KK
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMLFDGVKRLFHIRGKLRKK 68

HSP 2 Score: 82.0333 bits (201), Expect = 6.069e-34
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 1

Query:  265 GRCTKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 426
            G+  KKVWI   DIILVGLR+YQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   63 GKLRKKVWINTSDIILVGLREYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116

The following BLAST results are available for this feature:

BLAST of GO241565 vs. ExPASy Swiss-Prot

BLAST of GO241565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13


Match Name	E-value	Identity	Description
IF1A_ONOVI	3.676e-47	98.04	Eukaryotic translation initiation factor 1A OS=Ono...	[more]
IF1A_WHEAT	3.320e-45	92.16	Eukaryotic translation initiation factor 1A OS=Tri...	[more]
IF1AX_PONAB	8.176e-37	80.39	Eukaryotic translation initiation factor 1A, X-chr...	[more]
IF1AX_MOUSE	8.176e-37	80.39	Eukaryotic translation initiation factor 1A, X-chr...	[more]
IF1AX_HUMAN	8.176e-37	80.39	Eukaryotic translation initiation factor 1A, X-chr...	[more]
IF1AY_PANTR	1.808e-36	78.43	Eukaryotic translation initiation factor 1A, Y-chr...	[more]
IF1AY_HUMAN	1.808e-36	78.43	Eukaryotic translation initiation factor 1A, Y-chr...	[more]
IF1A_RAT	2.355e-36	78.43	Eukaryotic translation initiation factor 1A OS=Rat...	[more]
IF1A_MOUSE	2.355e-36	78.43	Eukaryotic translation initiation factor 1A OS=Mus...	[more]
IF1A_RABIT	6.069e-34	76.47	Eukaryotic translation initiation factor 1A OS=Ory...	[more]

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Properties


Property Name	Value
Genbank description	213 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 329 5, mRNA sequence.