GO241547

Overview
NameGO241547
Unique NameGO241547
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241547_ssr322 microsatellite GO241547_ssr322:322..336. BLAST: Citrus ESTs to Prunus persica proteins V1
GO241547_ssr23 microsatellite GO241547_ssr23:23..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1095 contig Csv1_Contig1095:53..628. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241547 vs. ExPASy Swiss-Prot
Match: RHA2A_ARATH (RING-H2 zinc finger protein RHA2a OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.818e-25
Identity = 70/170 (41.18%), Postives = 90/170 (52.94%), Query Frame = 3
Query:   78 MGLHGQXXXXXXXXXXXXXVALIANCFGNLRSLLFSLLHSVGMTRVDPVQNNPAGP----HVGSGLASLIVLAEQLNKNRAFSXXXXXXXXXXXXXDNCCCGQGVASSAAGSDCMVCLCTLRDGELVRKLDCRHVFRKDCLDGWLHHLNFNCPLCRSPVVSEERVWTRRR 575
            MGL GQ             ++L+A    +LRS L  L            ++NP  P     + SGLA++IVLA+QL+ NR FS                 CG G      GSDC+VCL  L++GE VRKL+CRHVF K CL+GWLH  NF CPLCRS +VS++ V   +R
Sbjct:    1 MGLQGQLSDVSSDSIPLMLLSLLAVFINHLRSFLLRLTS----------KSNPNLPVDDVSIASGLANIIVLADQLSLNRLFSYR---------------CGDG---GGGGSDCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDDCVSKTQR 142          
BLAST of GO241547 vs. ExPASy Swiss-Prot
Match: RHA2B_ARATH (RING-H2 zinc finger protein RHA2b OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 8.445e-23
Identity = 65/156 (41.67%), Postives = 78/156 (50.00%), Query Frame = 3
Query:   78 MGLHGQXXXXXXXXXXXXXVALIANCFGNLRSLLFSLLHSVGMTRVDPVQNNPAGPHVGSGLASLIVLAEQLNKNRAFSXXXXXXXXXXXXXDNCCCGQGVASSAAGSDCMVCLCTLRDGELVRKLDCRHVFRKDCLDGWLHHLNFNCPLCRSPVV 545
            MGL GQ             +AL+A  F ++RSLL                  P+   V    ++L VLA+QLN NR FS                       S  A SDC+VCL  L+ GE VRKLDCRHVF K CL+GWL HLNFNCPLCRSP++
Sbjct:    1 MGLQGQLSDVSSDSIPLMLLALLATFFRHVRSLLLF----------------PSSAPVVVVTSNLSVLADQLNLNRLFSYRY--------------------SDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLL 120          
The following BLAST results are available for this feature:
BLAST of GO241547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RHA2A_ARATH1.818e-2541.18RING-H2 zinc finger protein RHA2a OS=Arabidopsis t... [more]
RHA2B_ARATH8.445e-2341.67RING-H2 zinc finger protein RHA2b OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank description195 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 308 5, mRNA sequence.