GO241497 | Citrus Genome Database

Overview


Name	GO241497
Unique Name	GO241497
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	1

Libraries


Library Name	Type
Cara cara navel orange fruit cDNA library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
GO241497_ssr2	microsatellite	GO241497_ssr2:2..17.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1455	contig	Csv1_Contig1455:1..608.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of GO241497 vs. ExPASy Swiss-Prot
Match: TAF9B_RAT (Transcription initiation factor TFIID subunit 9B OS=Rattus norvegicus GN=Taf9b PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.138e-24
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = 2

Query:  284 YSEHAGKNTIDCDDVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQL 502
            YS HA K T+D DDV+LA+Q + + SF+ PP R+ LL++A+ +N+ PLP      G  LPP++  L +PNY+L
Sbjct:   57 YSSHAKKPTVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRL 129

HSP 2 Score: 56.9954 bits (136), Expect = 4.138e-24
Identity = 24/47 (51.06%), Postives = 35/47 (74.47%), Query Frame = 1

Query:  142 EDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQV 282
            ++ PRDA ++  +LK MG+ DYEPRVI+Q LE  +RYV  +L DA++
Sbjct:   10 KNAPRDALVMAQILKDMGITDYEPRVINQMLEFAFRYVTTILDDAKI 56

[Close]

BLAST of GO241497 vs. ExPASy Swiss-Prot
Match: TAF9_RAT (Transcription initiation factor TFIID subunit 9 OS=Rattus norvegicus GN=Taf9 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.383e-24
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 2

Query:  284 YSEHAGKNTIDCDDVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQL 502
            YS HA K T+D DDV+LA+Q + + SF+ PP R+ LL++A+ RN+ PLP      G  LPP++  L +PNY+L
Sbjct:   57 YSSHAKKPTVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129

HSP 2 Score: 55.4546 bits (132), Expect = 5.383e-24
Identity = 22/47 (46.81%), Postives = 36/47 (76.60%), Query Frame = 1

Query:  142 EDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQV 282
            + +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++
Sbjct:   10 KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKI 56

[Close]

BLAST of GO241497 vs. ExPASy Swiss-Prot
Match: TAF9_MOUSE (Transcription initiation factor TFIID subunit 9 OS=Mus musculus GN=Taf9 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.383e-24
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 2

Query:  284 YSEHAGKNTIDCDDVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQL 502
            YS HA K T+D DDV+LA+Q + + SF+ PP R+ LL++A+ RN+ PLP      G  LPP++  L +PNY+L
Sbjct:   57 YSSHAKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129

HSP 2 Score: 55.4546 bits (132), Expect = 5.383e-24
Identity = 22/47 (46.81%), Postives = 36/47 (76.60%), Query Frame = 1

Query:  142 EDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQV 282
            + +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++
Sbjct:   10 KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKI 56

[Close]

BLAST of GO241497 vs. ExPASy Swiss-Prot
Match: TAF9_HUMAN (Transcription initiation factor TFIID subunit 9 OS=Homo sapiens GN=TAF9 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.383e-24
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 2

Query:  284 YSEHAGKNTIDCDDVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQL 502
            YS HA K T+D DDV+LA+Q + + SF+ PP R+ LL++A+ RN+ PLP      G  LPP++  L +PNY+L
Sbjct:   57 YSSHAKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129

HSP 2 Score: 55.4546 bits (132), Expect = 5.383e-24
Identity = 22/47 (46.81%), Postives = 36/47 (76.60%), Query Frame = 1

Query:  142 EDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQV 282
            + +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++
Sbjct:   10 KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKI 56

[Close]

BLAST of GO241497 vs. ExPASy Swiss-Prot
Match: TAF9_BOVIN (Transcription initiation factor TFIID subunit 9 OS=Bos taurus GN=TAF9 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.383e-24
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 2

Query:  284 YSEHAGKNTIDCDDVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQL 502
            YS HA K T+D DDV+LA+Q + + SF+ PP R+ LL++A+ RN+ PLP      G  LPP++  L +PNY+L
Sbjct:   57 YSSHAKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129

HSP 2 Score: 55.4546 bits (132), Expect = 5.383e-24
Identity = 22/47 (46.81%), Postives = 36/47 (76.60%), Query Frame = 1

Query:  142 EDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQV 282
            + +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++
Sbjct:   10 KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKI 56

[Close]

BLAST of GO241497 vs. ExPASy Swiss-Prot
Match: TAF9B_MOUSE (Transcription initiation factor TFIID subunit 9B OS=Mus musculus GN=Taf9b PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.188e-23
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = 2

Query:  284 YSEHAGKNTIDCDDVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQL 502
            YS HA K T+D DDV+LA+Q + + SF+ PP R+ LL++A+ +N+ PLP      G  LPP++  L +PNY+L
Sbjct:   57 YSSHAKKPTVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRL 129

HSP 2 Score: 55.4546 bits (132), Expect = 1.188e-23
Identity = 23/47 (48.94%), Postives = 35/47 (74.47%), Query Frame = 1

Query:  142 EDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQV 282
            ++ PRDA ++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++
Sbjct:   10 KNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKI 56

[Close]

BLAST of GO241497 vs. ExPASy Swiss-Prot
Match: TAF9B_PONAB (Transcription initiation factor TFIID subunit 9B OS=Pongo abelii GN=TAF9B PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.431e-23
Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 2

Query:  284 YSEHAGKNTIDCDDVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQL 502
            YS HA K  +D DDV+LA+Q + + SF+ PP R+ LL++A+ +N+ PLP      G  LPP++  L +PNY+L
Sbjct:   57 YSSHAKKPNVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRL 129

HSP 2 Score: 55.4546 bits (132), Expect = 4.431e-23
Identity = 23/47 (48.94%), Postives = 35/47 (74.47%), Query Frame = 1

Query:  142 EDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQV 282
            ++ PRDA ++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++
Sbjct:   10 KNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKI 56

[Close]

BLAST of GO241497 vs. ExPASy Swiss-Prot
Match: TAF9B_HUMAN (Transcription initiation factor TFIID subunit 9B OS=Homo sapiens GN=TAF9B PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.431e-23
Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 2

Query:  284 YSEHAGKNTIDCDDVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQL 502
            YS HA K  +D DDV+LA+Q + + SF+ PP R+ LL++A+ +N+ PLP      G  LPP++  L +PNY+L
Sbjct:   57 YSSHAKKPNVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRL 129

HSP 2 Score: 55.4546 bits (132), Expect = 4.431e-23
Identity = 23/47 (48.94%), Postives = 35/47 (74.47%), Query Frame = 1

Query:  142 EDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQV 282
            ++ PRDA ++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++
Sbjct:   10 KNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKI 56

[Close]

BLAST of GO241497 vs. ExPASy Swiss-Prot
Match: TAF9_DROME (Transcription initiation factor TFIID subunit 9 OS=Drosophila melanogaster GN=e(y)1 PE=1 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 5.376e-20
Identity = 32/73 (43.84%), Postives = 45/73 (61.64%), Query Frame = 2

Query:  284 YSEHAGKNTIDCDDVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQL 502
            Y+ HA K TID DDV+LA +  ++ SF+ P  R VL ++A  RN +PLP      G+ LPP++  L   NY+L
Sbjct:   63 YANHARKKTIDLDDVRLATEVTLDKSFTGPLERHVLAKVADVRNSMPLPPIKPHCGLRLPPDRYCLTGVNYKL 135

HSP 2 Score: 55.8398 bits (133), Expect = 5.376e-20
Identity = 26/59 (44.07%), Postives = 43/59 (72.88%), Query Frame = 1

Query:  106 KRDPAEEMAEGDEDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQV 282
            K D A+  A+  + +P+DA+++ S+LK + V++YEPRV++Q LE  +RYV  +L DA+V
Sbjct:    5 KSDKAKISAQ-IKHVPKDAQVIMSILKELNVQEYEPRVVNQLLEFTFRYVTCILDDAKV 62

[Close]

BLAST of GO241497 vs. ExPASy Swiss-Prot
Match: TAF9_ENCCU (Transcription initiation factor TFIID subunit 9 OS=Encephalitozoon cuniculi GN=TAF9 PE=1 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 2.335e-17
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 1

Query:  127 MAEGDEDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDA 276
            MA G+   PRDAK++  +L+S+G+E+ EP+VI Q LE  YRY  DVL DA
Sbjct:    1 MASGENLAPRDAKVISVILRSLGIEECEPKVIIQLLEFAYRYTTDVLEDA 50

HSP 2 Score: 49.6766 bits (117), Expect = 2.335e-17
Identity = 27/83 (32.53%), Postives = 45/83 (54.22%), Query Frame = 2

Query:  284 YSEHAGKNTIDCDDVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQLSIERSNLLRQ 532
            +++H G+  I   DVKLA+Q+KV   F  PP R+ L E++   N  PL        I +PP    L++ +Y++  + S+  R+
Sbjct:   53 FAKHTGRTHITTSDVKLALQTKVGRHFVPPPPRQYLSEISTMVNSKPLTIPDGENLIRVPPSSSALLNLDYEVLRKDSDKKRR 135

The following BLAST results are available for this feature:

BLAST of GO241497 vs. ExPASy Swiss-Prot

BLAST of GO241497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11


Match Name	E-value	Identity	Description
TAF9B_RAT	4.138e-24	46.58	Transcription initiation factor TFIID subunit 9B O...	[more]
TAF9_RAT	5.383e-24	47.95	Transcription initiation factor TFIID subunit 9 OS...	[more]
TAF9_MOUSE	5.383e-24	47.95	Transcription initiation factor TFIID subunit 9 OS...	[more]
TAF9_HUMAN	5.383e-24	47.95	Transcription initiation factor TFIID subunit 9 OS...	[more]
TAF9_BOVIN	5.383e-24	47.95	Transcription initiation factor TFIID subunit 9 OS...	[more]
TAF9B_MOUSE	1.188e-23	46.58	Transcription initiation factor TFIID subunit 9B O...	[more]
TAF9B_PONAB	4.431e-23	45.21	Transcription initiation factor TFIID subunit 9B O...	[more]
TAF9B_HUMAN	4.431e-23	45.21	Transcription initiation factor TFIID subunit 9B O...	[more]
TAF9_DROME	5.376e-20	43.84	Transcription initiation factor TFIID subunit 9 OS...	[more]
TAF9_ENCCU	2.335e-17	54.00	Transcription initiation factor TFIID subunit 9 OS...	[more]

Pages

Properties


Property Name	Value
Genbank description	145 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 246 5, mRNA sequence.