GO241492

Overview
NameGO241492
Unique NameGO241492
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241492_ssr6 microsatellite GO241492_ssr6:6..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2614 contig Csv1_Contig2614:124..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241492 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.392e-22
Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVAMDVQAAETEGNCKCGPTCACVNCTC 278
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S ++  V MD  AAE +G CKCGP+C+C NCTC
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTC 63          
BLAST of GO241492 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.339e-19
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVAMDVQAAETEGNCKCGPTCACVNCTC 278
            MSD CGNCDCAD SQCVKKG+S   D VETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNS--IDIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of GO241492 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.349e-17
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 3
Query:   93 TCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVAMDVQAAETEGNCKCGPTCACVNCTC 278
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V+ +  +AAE +G CKCG  CAC +C C
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVI-VAAEAAEHDGKCKCGAACACTDCKC 63          
BLAST of GO241492 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.491e-16
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVAMDVQAAETEGNCKCGPTCACVNCTC 278
            MS  C NCDC+D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of GO241492 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.812e-15
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVAMDVQAAETEGNCKCGPTCACVNCTC 278
            MS  C NCDCAD +QCVKKG+SY    VET+   + TV  +D  AAE +G CKCG  C+CV+CTC
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVF-VDAPAAEHDGKCKCGTGCSCVSCTC 64          
BLAST of GO241492 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.796e-15
Identity = 35/65 (53.85%), Postives = 42/65 (64.62%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVAMDVQAAETEGNCKCGPTCACVNCTC 278
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C C
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKC 60          
BLAST of GO241492 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.796e-15
Identity = 35/65 (53.85%), Postives = 42/65 (64.62%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVAMDVQAAETEGNCKCGPTCACVNCTC 278
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C C
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKC 60          
BLAST of GO241492 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.543e-13
Identity = 33/65 (50.77%), Postives = 41/65 (63.08%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVAMDVQAAETEGNCKCGPTCACVNCTC 278
            MSD CGNCDCAD+SQCVKKG+SY    V+ + S     +A +V   E +G CKC   C+C  C C
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNC 63          
BLAST of GO241492 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.863e-13
Identity = 32/65 (49.23%), Postives = 41/65 (63.08%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVAMDVQAAETEGNCKCGPTCACVNCTC 278
            MSD CG+CDCAD+SQCVKKG+SY    V+ + S     +A +V   E +G CKC   C+C  C C
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNC 63          
The following BLAST results are available for this feature:
BLAST of GO241492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA1.392e-2267.69Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_ACTDE9.339e-1967.69Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_MUSAC1.349e-1759.68Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_PRUAV1.491e-1658.46Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO2.812e-1556.92Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ4.796e-1553.85Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI4.796e-1553.85Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ1.543e-1350.77Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI5.863e-1349.23Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank description140 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 237 5, mRNA sequence.