GO241482

Overview
NameGO241482
Unique NameGO241482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241482 vs. ExPASy Swiss-Prot
Match: PGLR5_ARATH (Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.002e-50
Identity = 93/160 (58.13%), Postives = 116/160 (72.50%), Query Frame = 2
Query:    2 GKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSG-GIAKSFCWEAYGSSVGQVEPPPCFACSEGLIGQKAPSNL 478
            GKS S   + DI V  A+IS+T NGVRIKTWQGGSG  + I F ++ M NVSNPIIIDQYYCDS  PCANQTSA+ +ENI+F+H++GTSA++EAIK +CSD SPC  + L+D+ L   +G G  +SFCWEAYGSS GQV PPPC +     + Q   S +
Sbjct:  280 GKSKSWEEVRDITVDTAIISDTANGVRIKTWQGGSGLVSKIIFRNIKMNNVSNPIIIDQYYCDSRKPCANQTSAISIENISFVHVRGTSASKEAIKISCSDSSPCRNILLQDIDLEPSNGDGFTESFCWEAYGSSSGQVYPPPCLSDDTSFLEQSVQSGI 439          
BLAST of GO241482 vs. ExPASy Swiss-Prot
Match: PGLR_ACTDE (Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.132e-35
Identity = 74/140 (52.86%), Postives = 91/140 (65.00%), Query Frame = 2
Query:    2 GKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEAYGSSVGQVEP 421
            G  NS   + D++V GA +  T NGVRIKTWQGGSGSA+NI+F +V M NV NPIIIDQ YCD   PC  Q+SAV+V+N+ + +IKGT A+  AI F CS   PC+G+ LEDV L    G  AK+ C     S  G V P
Sbjct:  314 GYGNSEAHVSDVVVNGAKLCGTTNGVRIKTWQGGSGSASNIKFQNVEMHNVENPIIIDQNYCDQDKPCQEQSSAVQVKNVVYQNIKGTCASNVAITFDCSKRFPCQGIVLEDVDLEIEGGAAAKALCNNVELSETGVVSP 453          
BLAST of GO241482 vs. ExPASy Swiss-Prot
Match: PGLR_PERAE (Polygalacturonase OS=Persea americana PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.251e-34
Identity = 65/120 (54.17%), Postives = 88/120 (73.33%), Query Frame = 2
Query:    2 GKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSG 361
            G  NS   +  ++V G  + +T NG+RIKTWQGGSGSA NI+F +++M NV+NPIIIDQYYCDS  PC  Q SAVKV N+ +++I+GTSA+E A+KF CS  SPC+G  + ++ LV + G
Sbjct:  309 GDRNSEAHVSGVLVDGGNLFDTTNGLRIKTWQGGSGSAKNIKFQNIVMHNVTNPIIIDQYYCDSKDPCPEQESAVKVSNVAYMNIRGTSASEVAVKFDCSKSSPCQGYIVGNINLVGNGG 428          
BLAST of GO241482 vs. ExPASy Swiss-Prot
Match: PGLR_SOLLC (Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.403e-33
Identity = 69/140 (49.29%), Postives = 95/140 (67.86%), Query Frame = 2
Query:    2 GKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEAYGSSVGQVEP 421
            G  NS   + ++ V  A I   +NGVRIKTWQGGSG A+NI+FL+V M++V  PIIIDQ YCD   PC  Q SAV+V+N+ + +IKGTSAT+ AIKF CS + PCEG+ +E++ LV  SG  +++ C   + ++   V P
Sbjct:  301 GSGNSEAYVSNVTVNEAKIIGAENGVRIKTWQGGSGQASNIKFLNVEMQDVKYPIIIDQNYCDRVEPCIQQFSAVQVKNVVYENIKGTSATKVAIKFDCSTNFPCEGIIMENINLVGESGKPSEATCKNVHFNNAEHVTP 440          
BLAST of GO241482 vs. ExPASy Swiss-Prot
Match: QRT2_ARATH (Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 6.642e-29
Identity = 63/141 (44.68%), Postives = 91/141 (64.54%), Query Frame = 2
Query:    2 GKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHS-GGIAKSFCWEAYGSSVGQVEP 421
            G+ NS   + +++V  A +  T NGVRIKTWQGG G A NI F D++MKNV+NPIII+Q YCD    C  Q SAV+V N+ + +I+GTS+   A+KF CS + PC G+ +++V+LV  +   ++K+ C      + G V P
Sbjct:  296 GEDNSEAYVSNVVVNKATLIGTTNGVRIKTWQGGHGMAKNIIFQDIIMKNVTNPIIINQDYCDRVEACPEQKSAVQVSNVLYKNIQGTSSRPIAVKFVCSKNIPCRGISMQNVKLVDQTQQDVSKASCSNVKLDTRGNVSP 436          
BLAST of GO241482 vs. ExPASy Swiss-Prot
Match: PGLR2_CRYJA (Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.675e-29
Identity = 65/140 (46.43%), Postives = 89/140 (63.57%), Query Frame = 2
Query:    2 GKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEAYGSSVGQVEP 421
            G+ NS   +  + V GA   +TQNG+RIKTWQGGSG A++I + +V M N  NPI+I+Q+YC S   C NQ SAV+++++T+ +I+GTSAT  AI+  CSD  PC+ + L D+ L   SG IA      A G   G V P
Sbjct:  286 GRENSRAEVSYVHVNGAKFIDTQNGLRIKTWQGGSGMASHIIYENVEMINSENPILINQFYCTSASACQNQRSAVQIQDVTYKNIRGTSATAAAIQLKCSDSMPCKDIKLSDISLKLTSGKIASCLNDNANGYFSGHVIP 425          
BLAST of GO241482 vs. ExPASy Swiss-Prot
Match: PGLR2_JUNAS (Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.591e-28
Identity = 64/140 (45.71%), Postives = 86/140 (61.43%), Query Frame = 2
Query:    2 GKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEAYGSSVGQVEP 421
            GK NS   +  + + GA   +TQNG+RIKTWQGGSG A++I + +V M N  NPI+I+Q+YC S   C NQ SAVK++++TF +I GTSAT  AI+  CSD  PC  + L +V L   SG +A      A G     + P
Sbjct:  287 GKGNSRSEVSFVHLDGAKFIDTQNGLRIKTWQGGSGLASHITYENVEMINAENPILINQFYCTSAAACKNQRSAVKIQDVTFKNIHGTSATTAAIQLMCSDSVPCSNIKLSNVFLKLTSGKVATCVNKNANGYYTNPLNP 426          
BLAST of GO241482 vs. ExPASy Swiss-Prot
Match: ADPG1_ARATH (Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.591e-28
Identity = 68/140 (48.57%), Postives = 90/140 (64.29%), Query Frame = 2
Query:    2 GKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEAYGSSVGQVEP 421
            G  NS   +  I V GA  S + NGVRIKT+QGGSG+A NI+F ++ M+NV NPIIIDQ YCD    C +Q SAV+V+N+ + +I GTSAT+ AI   CS+  PC+G+ LE+V++    GG A   C  A   + G V P
Sbjct:  295 GDDNSKAYVSGINVDGAKFSESDNGVRIKTYQGGSGTAKNIKFQNIRMENVKNPIIIDQDYCDKD-KCEDQESAVQVKNVVYKNISGTSATDVAITLNCSEKYPCQGIVLENVKI---KGGTAS--CKNANVKNQGTVSP 428          
BLAST of GO241482 vs. ExPASy Swiss-Prot
Match: PGLR_MALDO (Polygalacturonase OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.791e-27
Identity = 60/116 (51.72%), Postives = 80/116 (68.97%), Query Frame = 2
Query:    2 GKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPV-PCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQL 346
            G+  S   +  + V GA +S T NG+RIKTW+GGSGSATNI F +V M +V+NPIIIDQ YCD     C  Q SAV+V+N+ + +I+GTSA+ +AI   CS   PC+G+ L+ VQL
Sbjct:  323 GEDGSEDHVSGVFVNGAKLSGTSNGLRIKTWKGGSGSATNIVFQNVQMNDVTNPIIIDQNYCDHKTKDCKQQKSAVQVKNVLYQNIRGTSASGDAITLNCSQSVPCQGIVLQSVQL 438          
BLAST of GO241482 vs. ExPASy Swiss-Prot
Match: ADPG2_ARATH (Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.060e-26
Identity = 67/140 (47.86%), Postives = 87/140 (62.14%), Query Frame = 2
Query:    2 GKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKFACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEAYGSSVGQVEP 421
            G  NS   +  + V GA +S T NGVRIKT+QGGSG+A+NI F ++ M NV NPIIIDQ YCD    C  + SAV+V+N+ +  I GTSA+E AI F CS + PC+G+ L+ V +    GG  K+ C  A     G V P
Sbjct:  295 GDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMDNVKNPIIIDQDYCDKS-KCTTEKSAVQVKNVVYRDISGTSASENAITFNCSKNYPCQGIVLDRVNI---KGG--KATCTNANVVDKGAVLP 428          
The following BLAST results are available for this feature:
BLAST of GO241482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PGLR5_ARATH4.002e-5058.13Probable polygalacturonase At1g80170 OS=Arabidopsi... [more]
PGLR_ACTDE2.132e-3552.86Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1[more]
PGLR_PERAE5.251e-3454.17Polygalacturonase OS=Persea americana PE=2 SV=1[more]
PGLR_SOLLC3.403e-3349.29Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2... [more]
QRT2_ARATH6.642e-2944.68Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=... [more]
PGLR2_CRYJA8.675e-2946.43Polygalacturonase OS=Cryptomeria japonica PE=1 SV=... [more]
PGLR2_JUNAS9.591e-2845.71Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 ... [more]
ADPG1_ARATH9.591e-2848.57Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN... [more]
PGLR_MALDO2.791e-2751.72Polygalacturonase OS=Malus domestica PE=2 SV=1[more]
ADPG2_ARATH1.060e-2647.86Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank description130 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 226 5, mRNA sequence.