GO241474

Overview
NameGO241474
Unique NameGO241474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241474 vs. ExPASy Swiss-Prot
Match: RPAP2_PONAB (RNA polymerase II-associated protein 2 OS=Pongo abelii GN=RPAP2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.537e-11
Identity = 38/88 (43.18%), Postives = 51/88 (57.95%), Query Frame = 1
Query:  271 AVHKLQLALLEGIEAEKQLLAAGTLISKSDYNDVVTERSIADLCGYPLCSNPLPPADSRTRKGRYRISLKEHKVYDVRENYLYCSTNC 534
            A+H ++  L E I  E+ L+  G  I+ + Y+DVV ERSI  LCGYPLC   L        K +Y+IS K +KVYD+ E   +CS  C
Sbjct:   58 ALHIVEQLLEENI-TEEFLMECGKFITPAHYSDVVDERSIVKLCGYPLCQKKL----GIVPKQKYKISTKTNKVYDITERKSFCSNFC 140          
BLAST of GO241474 vs. ExPASy Swiss-Prot
Match: RPAP2_HUMAN (RNA polymerase II-associated protein 2 OS=Homo sapiens GN=RPAP2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.537e-11
Identity = 38/88 (43.18%), Postives = 51/88 (57.95%), Query Frame = 1
Query:  271 AVHKLQLALLEGIEAEKQLLAAGTLISKSDYNDVVTERSIADLCGYPLCSNPLPPADSRTRKGRYRISLKEHKVYDVRENYLYCSTNC 534
            A+H ++  L E I  E+ L+  G  I+ + Y+DVV ERSI  LCGYPLC   L        K +Y+IS K +KVYD+ E   +CS  C
Sbjct:   58 ALHIVEQLLEENI-TEEFLMECGRFITPAHYSDVVDERSIVKLCGYPLCQKKL----GIVPKQKYKISTKTNKVYDITERKSFCSNFC 140          
The following BLAST results are available for this feature:
BLAST of GO241474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RPAP2_PONAB3.537e-1143.18RNA polymerase II-associated protein 2 OS=Pongo ab... [more]
RPAP2_HUMAN3.537e-1143.18RNA polymerase II-associated protein 2 OS=Homo sap... [more]
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Properties
Property NameValue
Genbank description122 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 213 5, mRNA sequence.