GO241473

Overview
NameGO241473
Unique NameGO241473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241473_ssr28 microsatellite GO241473_ssr28:28..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_ORYSJ (40S ribosomal protein S3a OS=Oryza sativa subsp. japonica GN=RPS3A PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 1.556e-46
Identity = 94/125 (75.20%), Postives = 105/125 (84.00%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWYDIKAPS F VRN+GKTLV+RTQGTKIASEGLKH VFEVSL DL N+E+ AYRKIRLRAEDVQGKNVLTNFWGM+FTTDKLRSLV+KW TLIEA+V  +     ++     +GFTKR PNQVK
Sbjct:   28 DWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTT-DGYMLRLFCIGFTKRRPNQVK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A2_VITVI (40S ribosomal protein S3a-2 OS=Vitis vinifera GN=GSVIVT00031140001 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 3.832e-45
Identity = 94/127 (74.02%), Postives = 105/127 (82.68%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQ--DH**LHIXGCSALGFTKRLPNQVK 591
            DWYDIKAPS F VRNVGKTLV+RTQGTKIASEGLKH VFE+SL DL N+E+HAYRKIRLRAEDVQGKNVLTNFWGM+FTTDKLRSLVRKW TLIEA+V  +  D+  L +     + FTK+  NQ K
Sbjct:   28 DWYDIKAPSIFSVRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQNDEDHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMF---CIAFTKKRQNQNK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_HELAN (40S ribosomal protein S3a OS=Helianthus annuus GN=RPS3A PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.456e-44
Identity = 93/127 (73.23%), Postives = 105/127 (82.68%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQ--DH**LHIXGCSALGFTKRLPNQVK 591
            DWYDIKAPS F  RNVGKTLVTRTQGTKIASEGLKH VFEVSL DL N+E+H+YRKIRLRAEDVQGKNVLTNFWGM+ TTDKLRSLV+KW +LIEA+V  +  D+  L +     +GFTK+  NQVK
Sbjct:   28 DWYDIKAPSLFITRNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQNDEDHSYRKIRLRAEDVQGKNVLTNFWGMDVTTDKLRSLVKKWQSLIEAHVDVKTTDNFTLRMF---CIGFTKKRANQVK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_CICAR (40S ribosomal protein S3a OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 7.227e-44
Identity = 92/127 (72.44%), Postives = 107/127 (84.25%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQ--DH**LHIXGCSALGFTKRLPNQVK 591
            DWYDIKAPS F+V+NVGKTLV+RTQGTKIASEGLKH VFE+SL DL  +E++A+RKIRLRAEDVQGKNVLTNF+GM+FTTDKLRSLVRKW TLIEA+V  +  D+  L +     +GFTKR  NQVK
Sbjct:   28 DWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQGDEDNAFRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMF---CIGFTKRRSNQVK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_CATRO (40S ribosomal protein S3a OS=Catharanthus roseus GN=RPS3A PE=2 SV=4)

HSP 1 Score: 176.022 bits (445), Expect = 1.233e-43
Identity = 88/125 (70.40%), Postives = 102/125 (81.60%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWYDIKAPS F VRNVGKTLVTRTQGTKIASEGL+H VFE+SL DL  +E+H++RKIRLRAED+QGKNVLTNFWGM+FTTDKLRSLVRKW +LIEA+V  +     +      +GFTK+  NQ K
Sbjct:   28 DWYDIKAPSVFSVRNVGKTLVTRTQGTKIASEGLEHRVFEISLADLQGDEDHSFRKIRLRAEDIQGKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTT-DSYTLRMFCIGFTKKRANQQK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_TOBAC (40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.587e-43
Identity = 88/125 (70.40%), Postives = 101/125 (80.80%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            DWYDIKAPS F ++NVGKTLVTRTQGTKIASEGLKH VFEVSL DL  +E+ ++RKIRLRAEDVQGKNVLTNFWGM+FTTDKLRSLV+KW TLIEA+V  +     +      + FTK+ PNQ K
Sbjct:   28 DWYDIKAPSVFDIKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQKDEDQSFRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTT-DSYTLRMFCIAFTKKRPNQQK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A1_VITVI (40S ribosomal protein S3a-1 OS=Vitis vinifera GN=GSVIVT00020038001 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 4.684e-43
Identity = 91/127 (71.65%), Postives = 103/127 (81.10%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQ--DH**LHIXGCSALGFTKRLPNQVK 591
            DWYDIKAPS F VRNVGKTLV+RTQGTKIASEGLKH VFE+SL DL  +E+ AYRKIRLRAEDVQG+NVLTNFWGM+FTTDKLRSLVRKW TLIEA+V  +  D+  L +     + FTK+  NQ K
Sbjct:   28 DWYDIKAPSVFEVRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQADEDQAYRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRLF---CIAFTKKRVNQNK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A2_ARATH (40S ribosomal protein S3a-2 OS=Arabidopsis thaliana GN=RPS3AB PE=2 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 1.780e-42
Identity = 90/127 (70.87%), Postives = 102/127 (80.31%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQ--DH**LHIXGCSALGFTKRLPNQVK 591
            DWYD+KAP  F  RNVGKTLV+RTQGTKIASEGLKH VFEVSL DL N+E++AYRKIRLRAEDVQG+NVLT FWGM+FTTDKLRSLV+KW TLIEA+V  +  D   L +     + FTKR  NQVK
Sbjct:   28 DWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDNAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMF---CIAFTKRRANQVK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_BRARA (40S ribosomal protein S3a OS=Brassica rapa GN=RPS3A PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 3.036e-42
Identity = 90/127 (70.87%), Postives = 102/127 (80.31%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQ--DH**LHIXGCSALGFTKRLPNQVK 591
            DWYDIKAPS F  RNVGKTLV+RTQGTKIASEGLKH VFEVSL DL  +E+ AYRKIRLRAEDVQG+NVLT FWGM+FTTDKLRSLV+KW TLIE++V  +  D+  L +     + FTKR  NQVK
Sbjct:   28 DWYDIKAPSSFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLNKDEDQAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIESHVDVKTTDNYTLRLF---CIAFTKRRANQVK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A1_ARATH (40S ribosomal protein S3a-1 OS=Arabidopsis thaliana GN=RPS3AA PE=1 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 8.834e-42
Identity = 89/127 (70.08%), Postives = 101/127 (79.53%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQ--DH**LHIXGCSALGFTKRLPNQVK 591
            DWYD+KAPS F  RNVGKTLV+RTQGTKIASEGLKH VFEVSL DL  +E++AYRKIRLRAEDVQG+NVL  FWGM+FTTDKLRSLV+KW TLIEA+V  +  D   L +     + FTKR  NQVK
Sbjct:   28 DWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEDNAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLF---CIAFTKRRANQVK 151          
The following BLAST results are available for this feature:
BLAST of GO241473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
RS3A_ORYSJ1.556e-4675.2040S ribosomal protein S3a OS=Oryza sativa subsp. j... [more]
RS3A2_VITVI3.832e-4574.0240S ribosomal protein S3a-2 OS=Vitis vinifera GN=G... [more]
RS3A_HELAN1.456e-4473.2340S ribosomal protein S3a OS=Helianthus annuus GN=... [more]
RS3A_CICAR7.227e-4472.4440S ribosomal protein S3a OS=Cicer arietinum PE=2 ... [more]
RS3A_CATRO1.233e-4370.4040S ribosomal protein S3a OS=Catharanthus roseus G... [more]
RS3A_TOBAC3.587e-4370.4040S ribosomal protein S3a OS=Nicotiana tabacum GN=... [more]
RS3A1_VITVI4.684e-4371.6540S ribosomal protein S3a-1 OS=Vitis vinifera GN=G... [more]
RS3A2_ARATH1.780e-4270.8740S ribosomal protein S3a-2 OS=Arabidopsis thalian... [more]
RS3A_BRARA3.036e-4270.8740S ribosomal protein S3a OS=Brassica rapa GN=RPS3... [more]
RS3A1_ARATH8.834e-4270.0840S ribosomal protein S3a-1 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank description121 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 212 5, mRNA sequence.